ECOD: domain e3uydU2

Domain ID e3uydU2

A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: Ribosomal_S18

UID:	001159915
Type:	Automatic domain
Parent:	e2uubR1
Range:	U:17-88
PDB:	3uyd
PDB Description:
Hsap BLAST neighbor:	Q9Y3D5
Species:

Domain
In chain context
In PDB context

Structure of domain e3uydU2

Domains in the same chain:

Download Pymol

e3uydU2	U:17-88	HTH	HTH	tri-helical

Domains in the same PDB:

e3uydF2	F:1-105	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e3uydF1	F:106-206	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e3uydH4	H:5-72	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e3uydH3	H:73-155	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3uydI1	I:1-101	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e3uydJ1	J:1-155	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e3uydK1	K:1-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e3uydK2	K:67-138	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e3uydM1	M:1-98	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e3uydN1	N:1-119	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3uydO1	O:4-125	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3uydQ1	Q:1-60	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e3uydR2	R:2-89	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e3uydS1	S:1-83	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e3uydU2	U:17-88	HTH	HTH	tri-helical
e3uydW1	W:1-99	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e3uydU2 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3uydI1	U:x,y,z->I:X,Y,Z	Ribosomal protein S6	Interaction Interface Pymol
e3uydN1	U:x,y,z->N:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol