Domain ID e3vtiB16

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: HypF_C_2
UID: 001187874
Type: Automatic domain
Parent: e3ttdA7
Range: B:499-751
Ligands: FE
PDB: 3vti
PDB Description: HYDROGENASE MATURATION FACTOR
UniProt: Q8RDB0
Species:

Structure of domain e3vtiB16

Domains in the same chain:

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e3vtiB15 B:8-105 Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like
e3vtiB13 B:106-141 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vtiB12 B:142-191 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vtiB14 B:192-390 YrdC/RibB YrdC/RibB YrdC/RibB
e3vtiB17 B:391-498 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vtiB16 B:499-751 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3vtiA15 A:8-104 Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like
e3vtiA13 A:105-141 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vtiA12 A:142-192 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vtiA14 A:193-390 YrdC/RibB YrdC/RibB YrdC/RibB
e3vtiA17 A:391-495 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vtiA16 A:496-751 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vtiB15 B:8-105 Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like
e3vtiB13 B:106-141 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vtiB12 B:142-191 Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF Zinc finger domain in hydrogenase maturation protein HypF
e3vtiB14 B:192-390 YrdC/RibB YrdC/RibB YrdC/RibB
e3vtiB17 B:391-498 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vtiB16 B:499-751 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3vtiC4 C:60-172 Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like
e3vtiC3 C:173-342 Alpha-beta plaits PurM C-terminal domain-like PurM C-terminal domain-like
e3vtiD4 D:60-172 Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like
e3vtiD3 D:173-342 Alpha-beta plaits PurM C-terminal domain-like PurM C-terminal domain-like

Structural contacts of domain e3vtiB16 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vtiD3 B:X,Y,Z->D:x,y,z PurM C-terminal domain-like Interaction Interface Pymol
e3vtiA17 B:X-1/2,-Y-1/2,-Z+1->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3vtiA16 B:-X-1/2,-Y-1,Z-1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3vtiD3 B:x,y,z->D:-X,Y-1/2,-Z+3/2 PurM C-terminal domain-like Interaction Interface Pymol
e3vtiC3 B:x,y,z->C:X-1/2,-Y-1/2,-Z+1 PurM C-terminal domain-like Interaction Interface Pymol