ECOD: domain e3vtiD3

Domain ID e3vtiD3

A: a+b two layers
X: Alpha-beta plaits
H: PurM C-terminal domain-like
T: PurM C-terminal domain-like
F: AIRS_C

UID:	001268217
Type:	Automatic domain
Parent:	e1cliA1
Range:	D:173-342
Ligands:	MG
PDB:	3vti
PDB Description:	HYDROGENASE MATURATION FACTOR
UniProt:	Q8RDA7
Species:

Domains in the same chain:

Download Pymol

e3vtiD4	D:60-172	Bacillus chorismate mutase-like	PurM N-terminal domain-like	PurM N-terminal domain-like
e3vtiD3	D:173-342	Alpha-beta plaits	PurM C-terminal domain-like	PurM C-terminal domain-like

Domains in the same PDB:

e3vtiA15	A:8-104	Alpha-beta plaits	Acylphosphatase-like	Acylphosphatase-like
e3vtiA13	A:105-141	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF
e3vtiA12	A:142-192	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF
e3vtiA14	A:193-390	YrdC/RibB	YrdC/RibB	YrdC/RibB
e3vtiA17	A:391-495	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3vtiA16	A:496-751	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3vtiB15	B:8-105	Alpha-beta plaits	Acylphosphatase-like	Acylphosphatase-like
e3vtiB13	B:106-141	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF
e3vtiB12	B:142-191	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF	Zinc finger domain in hydrogenase maturation protein HypF
e3vtiB14	B:192-390	YrdC/RibB	YrdC/RibB	YrdC/RibB
e3vtiB17	B:391-498	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3vtiB16	B:499-751	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3vtiC4	C:60-172	Bacillus chorismate mutase-like	PurM N-terminal domain-like	PurM N-terminal domain-like
e3vtiC3	C:173-342	Alpha-beta plaits	PurM C-terminal domain-like	PurM C-terminal domain-like
e3vtiD4	D:60-172	Bacillus chorismate mutase-like	PurM N-terminal domain-like	PurM N-terminal domain-like
e3vtiD3	D:173-342	Alpha-beta plaits	PurM C-terminal domain-like	PurM C-terminal domain-like

Structural contacts of domain e3vtiD3 of H-group "PurM C-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vtiB17	D:x,y,z->B:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e3vtiB14	D:x,y,z->B:X,Y,Z	YrdC/RibB	Interaction Interface Pymol
e3vtiB16	D:x,y,z->B:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e3vtiC3	D:x,y,z->C:X-1/2,-Y-1/2,-Z+1	PurM C-terminal domain-like	Interaction Interface Pymol
e3vtiA16	D:x,y,z->A:X-1/2,-Y-1/2,-Z+1	Ribonuclease H-like	Interaction Interface Pymol
e3vtiB16	D:-X,Y-1/2,-Z+3/2->B:x,y,z	Ribonuclease H-like	Interaction Interface Pymol