Domain ID e3zefB2

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: U6-snRNA_bdg,U5_2-snRNA_bdg
UID: 001309340
Type: Automatic domain
Parent: e3zefE2
Range: B:1256-1575
PDB: 3zef
PDB Description: PRE-MRNA-SPLICING FACTOR 8
UniProt: P33334
Hsap BLAST neighbor: Q6P2Q9
Species: Saccharomyces cerevisiae

Structure of domain e3zefB2

Domains in the same chain:

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e3zefB1 B:883-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3zefB2 B:1256-1575 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zefB5 B:1594-1827 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3zefB3 B:1831-2091,B:2150-2154 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3zefB4 B:2153-2387 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like

Domains in the same PDB:

e3zefA2 A:2-169 Immunoglobulin-like beta-sandwich N-terminal domain in A1 cistron-splicing factor AAR2 N-terminal domain in A1 cistron-splicing factor AAR2
e3zefA1 A:169-355 Repetitive alpha hairpins ARM repeat ARM repeat
e3zefB1 B:883-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3zefB2 B:1256-1575 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zefB5 B:1594-1827 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3zefB3 B:1831-2091,B:2150-2154 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3zefB4 B:2153-2387 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like
e3zefD2 D:2-151 Immunoglobulin-like beta-sandwich N-terminal domain in A1 cistron-splicing factor AAR2 N-terminal domain in A1 cistron-splicing factor AAR2
e3zefD1 D:152-355 Repetitive alpha hairpins ARM repeat ARM repeat
e3zefE1 E:883-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3zefE2 E:1256-1574 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zefE3 E:1596-1827 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3zefE4 E:1831-2096 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3zefE5 E:2153-2396 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like

Structural contacts of domain e3zefB2 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3zefA1 B:x,y,z->A:X,Y,Z ARM repeat Interaction Interface Pymol
e3zefE3 B:X,Y,Z->E:x,y,z Restriction endonuclease-like Interaction Interface Pymol
e3zefE2 B:X,Y,Z->E:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol