ECOD: domain e3zefB2

Domain ID e3zefB2

A: alpha bundles
X: helical bundle domain in reverse transcriptase-like polymerases
H: helical bundle domain in reverse transcriptase-like polymerases
T: helical bundle domain in reverse transcriptase-like polymerases
F: U6-snRNA_bdg,U5_2-snRNA_bdg

UID:	001309340
Type:	Automatic domain
Parent:	e3zefE2
Range:	B:1256-1575
PDB:	3zef
PDB Description:	PRE-MRNA-SPLICING FACTOR 8
UniProt:	P33334
Hsap BLAST neighbor:	Q6P2Q9
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e3zefA2	A:2-169	Immunoglobulin-like beta-sandwich	N-terminal domain in A1 cistron-splicing factor AAR2	N-terminal domain in A1 cistron-splicing factor AAR2
e3zefA1	A:169-355	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3zefB1	B:883-1255	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3zefB2	B:1256-1575	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e3zefB5	B:1594-1827	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease-like
e3zefB3	B:1831-2091,B:2150-2154	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3zefB4	B:2153-2387	Cytidine deaminase-like	Cytidine deaminase-like	Cytidine deaminase-like
e3zefD2	D:2-151	Immunoglobulin-like beta-sandwich	N-terminal domain in A1 cistron-splicing factor AAR2	N-terminal domain in A1 cistron-splicing factor AAR2
e3zefD1	D:152-355	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3zefE1	E:883-1255	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3zefE2	E:1256-1574	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e3zefE3	E:1596-1827	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease-like
e3zefE4	E:1831-2096	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3zefE5	E:2153-2396	Cytidine deaminase-like	Cytidine deaminase-like	Cytidine deaminase-like

Structural contacts of domain e3zefB2 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3zefA1	B:x,y,z->A:X,Y,Z	ARM repeat	Interaction Interface Pymol
e3zefE3	B:X,Y,Z->E:x,y,z	Restriction endonuclease-like	Interaction Interface Pymol
e3zefE2	B:X,Y,Z->E:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol