ECOD: domain e3zgzD2

Domain ID e3zgzD2

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: acid protease
F: tRNA-synt_1_2

UID:	001762458
Type:	Automatic domain
Parent:	e1ffyA1
Range:	D:226-416
PDB:	3zgz
PDB Description:	LEUCINE--TRNA LIGASE
UniProt:	P07813
Hsap BLAST neighbor:	P26640
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e3zgzD2

Domains in the same chain:

Download Pymol

e3zgzD5	D:-8-148,D:490-566	HUP domain-like	HUP domains	HUP domains
e3zgzD7	D:148-225	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3zgzD2	D:226-416	cradle loop barrel	RIFT-related	acid protease
e3zgzD8	D:416-489	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3zgzD9	D:569-618	Rubredoxin-like	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)
e3zgzD6	D:619-796	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e3zgzD4	D:797-860	beta-Grasp	beta-grasp fold domain in leucine-tRNA ligase	beta-grasp fold domain in leucine-tRNA ligase

Domains in the same PDB:

e3zgzA8	A:1-148,A:490-568	HUP domain-like	HUP domains	HUP domains
e3zgzA2	A:148-225	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3zgzA4	A:226-415	cradle loop barrel	RIFT-related	acid protease
e3zgzA6	A:416-489	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3zgzA5	A:570-618	Rubredoxin-like	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)
e3zgzA7	A:619-796	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e3zgzA1	A:797-860	beta-Grasp	beta-grasp fold domain in leucine-tRNA ligase	beta-grasp fold domain in leucine-tRNA ligase
e3zgzD5	D:-8-148,D:490-566	HUP domain-like	HUP domains	HUP domains
e3zgzD7	D:148-225	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3zgzD2	D:226-416	cradle loop barrel	RIFT-related	acid protease
e3zgzD8	D:416-489	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3zgzD9	D:569-618	Rubredoxin-like	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)
e3zgzD6	D:619-796	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e3zgzD4	D:797-860	beta-Grasp	beta-grasp fold domain in leucine-tRNA ligase	beta-grasp fold domain in leucine-tRNA ligase

Structural contacts of domain e3zgzD2 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3zgzD4	D:X-1/2,Y-1/2,Z->D:x,y,z	beta-grasp fold domain in leucine-tRNA ligase	Interaction Interface Pymol
e3zgzD2	D:x,y,z->D:-X-1/2,Y-1/2,-Z	RIFT-related	Interaction Interface Pymol
e3zgzD2	D:x,y,z->D:-X-1/2,Y-1/2,-Z	RIFT-related	Interaction Interface Pymol
e3zgzD2	D:-X-1/2,Y-1/2,-Z->D:x,y,z	RIFT-related	Interaction Interface Pymol
e3zgzD2	D:X-1/2,Y+1/2,Z->D:x,y,z	RIFT-related	Interaction Interface Pymol