Domain ID e4b1pJ1

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  • A: alpha bundles
  • X: YqgQ-like
  • H: YqgQ-like
  • T: YqgQ-like
  • F: RNA_pol_Rpo13
UID: 001385744
Type: Automatic domain
Parent: e4aybQ1
Range: J:33-81
PDB: 4b1p
PDB Description:
Species:

Structure of domain e4b1pJ1

Domains in the same chain:

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e4b1pJ1 J:33-81 YqgQ-like YqgQ-like YqgQ-like

Domains in the same PDB:

e4b1pI1 I:1-84 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4b1pJ1 J:33-81 YqgQ-like YqgQ-like YqgQ-like
e4b1pM1 M:1-91 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4b1pO1 O:1-65 HTH RPB10 RPB10
e4b1pR4 R:7-170,R:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4b1pR2 R:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4b1pR3 R:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4b1pR1 R:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4b1pR5 R:716-752,R:876-998 cradle loop barrel RIFT-related double psi
e4b1pR7 R:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4b1pR6 R:999-1125 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4b1pS2 S:2-36,S:159-263 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4b1pS1 S:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4b1pT2 T:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4b1pT3 T:79-178 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b1pU1 U:1-105 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4b1pV2 V:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b1pX2 X:5-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4b1pY6 Y:64-100,Y:258-394 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4b1pY4 Y:101-130,Y:214-257 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4b1pZ1 Z:1-76 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit

Structural contacts of domain e4b1pJ1 of H-group "YqgQ-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b1pZ1 J:X,Y,Z->Z:x,y,z RPB5-like RNA polymerase subunit Interaction Interface Pymol