ECOD: domain e4aybQ1

Domain ID e4aybQ1

A: alpha bundles
X: YqgQ-like
H: YqgQ-like
T: YqgQ-like
F: RNA_pol_Rpo13

UID:	000151743
Type:	Automatic and representative domain
Range:	Q:33-82
PDB:	4ayb
PDB Description:	DNA-DIRECTED RNA POLYMERASE
UniProt:	B8YB65
Species:	Sulfolobus shibatae

Domains in the same chain:

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e4aybQ1	Q:33-82	YqgQ-like	YqgQ-like	YqgQ-like

Domains in the same PDB:

e4aybA1	A:3-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4aybA3	A:307-494	cradle loop barrel	RIFT-related	double psi
e4aybA4	A:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4aybA2	A:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4aybB3	B:7-170,B:345-475	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4aybB7	B:171-344	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4aybB6	B:476-575	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4aybB2	B:576-715	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4aybB5	B:716-752,B:876-998	cradle loop barrel	RIFT-related	double psi
e4aybB4	B:753-875	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4aybB1	B:999-1125	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4aybC4	C:6-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4aybC1	C:66-115,C:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4aybC3	C:116-147,C:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4aybC2	C:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4aybD1	D:2-36,D:159-263	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4aybD2	D:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4aybE2	E:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4aybE1	E:79-178	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4aybF1	F:3-110	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4aybG1	G:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4aybH1	H:8-83	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4aybK2	K:11-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4aybL1	L:1-91	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4aybN1	N:1-65	HTH	RPB10	RPB10
e4aybP2	P:5-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4aybQ1	Q:33-82	YqgQ-like	YqgQ-like	YqgQ-like