Domain ID e4b3rE2

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 001087906
Type: Automatic domain
Parent: e1pkpA1
Range: E:1-69
Ligands: MG
PDB: 4b3r
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4b3rE2

Domains in the same chain:

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e4b3rE2 E:1-69 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b3rE1 E:70-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4b3rB1 B:1-121,B:151-235 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4b3rC2 C:1-104 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4b3rC1 C:105-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4b3rD1 D:1-208 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4b3rE2 E:1-69 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b3rE1 E:70-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3rF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4b3rG1 G:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4b3rH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4b3rH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4b3rI1 I:1-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3rJ1 J:1-99 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4b3rK1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b3rL1 L:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3rM1 M:1-125 HhH/H2TH H2TH H2TH
e4b3rN1 N:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4b3rO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4b3rP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4b3rQ1 Q:1-104 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3rR1 R:1-73 HTH HTH tri-helical
e4b3rS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4b3rT1 T:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4b3rE2 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b3rE1 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4b3rE1 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4b3rC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol