Domain ID e4b3tE2

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 001087950
Type: Automatic domain
Parent: e1pkpA1
Range: E:1-69
Ligands: MG
PDB: 4b3t
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4b3tE2

Domains in the same chain:

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e4b3tE2 E:1-69 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b3tE1 E:70-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4b3tB1 B:1-121,B:151-235 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4b3tC2 C:1-104 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4b3tC1 C:105-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4b3tD1 D:1-208 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4b3tE2 E:1-69 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b3tE1 E:70-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3tF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4b3tG1 G:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4b3tH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4b3tH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4b3tI1 I:1-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b3tJ1 J:1-99 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4b3tK1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b3tL1 L:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3tM1 M:1-125 HhH/H2TH H2TH H2TH
e4b3tN1 N:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4b3tO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4b3tP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4b3tQ1 Q:1-104 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b3tR1 R:1-73 HTH HTH tri-helical
e4b3tS1 S:1-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4b3tT1 T:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4b3tE2 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b3tE1 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4b3tE1 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4b3tC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol