Domain ID e4b8iR1

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  • A: a+b two layers
  • X: Enolase-N/ribosomal protein
  • H: Prokaryotic ribosomal protein L17
  • T: Prokaryotic ribosomal protein L17
  • F: Ribosomal_L17
UID: 000966535
Type: Automatic domain
Parent: e1gd8A1
Range: R:1-117
PDB: 4b8i
PDB Description:
Hsap BLAST neighbor: Q9NRX2
Species:

Structure of domain e4b8iR1

Domains in the same chain:

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e4b8iR1 R:1-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17

Domains in the same PDB:

e4b8i01 0:1-75 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4b8i11 1:1-94 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4b8i21 2:1-69 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4b8i31 3:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4b8i41 4:1-46 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e4b8i51 5:1-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4b8i71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4b8i81 8:1-63 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4b8i91 9:1-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4b8iC4 C:2-68,C:161-229 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e4b8iC3 C:69-160 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e4b8iD5 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b8iD6 D:127-276 SH3 SH3 SH3
e4b8iF2 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4b8iG1 G:1-180 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4b8iH4 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4b8iH3 H:83-178 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4b8iN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4b8iO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4b8iR1 R:1-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4b8iU1 U:1-115 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4b8iV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4b8iW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4b8iX1 X:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4b8iY2 Y:2-108 SH3 SH3 SH3
e4b8iZ1 Z:1-90 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4b8iZ2 Z:91-185 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e4b8iR1 of H-group "Prokaryotic ribosomal protein L17":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b8i51 R:x,y,z->5:X,Y,Z Rubredoxin-related Interaction Interface Pymol
e4b8i51 R:x,y,z->E:X,Y,Z Rubredoxin-related Interaction Interface Pymol
e4b8iW1 R:X,Y,Z->W:x,y,z Ribosomal protein L22 Interaction Interface Pymol