Domain ID e4bpeL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001066536
Type: Automatic domain
Parent: e2uubL1
Range: L:2-141
Ligands: MG
PDB: 4bpe
PDB Description:
Hsap BLAST neighbor: P62266
Species:

Structure of domain e4bpeL1

Domains in the same chain:

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e4bpeL1 L:2-141 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4bpe01 0:18-116 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpe11 1:3-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpe21 2:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4bpe31 3:2-109 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpe32 3:110-197 Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related
e4bpe41 4:21-116 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4bpe42 4:117-229 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4bpe51 5:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpe62 6:26-81 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpe71 7:2-102 HTH HTH winged
e4bpe81 8:37-115 HTH HTH winged
e4bpe91 9:72-164 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4bpeC3 C:4-103 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4bpeC1 C:95-231 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4bpeF1 F:13-101 Glucose permease domain IIB-like eIF1-like eIF1-like
e4bpeG1 G:9-200 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4bpeH1 H:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4bpeH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4bpeJ1 J:13-120 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4bpeK1 K:12-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4bpeL1 L:2-141 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpeN1 N:2-55 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4bpeO2 O:2-84 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4bpeO1 O:85-153 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4bpeP1 P:2-149 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4bpeR1 R:6-343 beta-propeller-like beta-propeller 7-bladed
e4bpeT1 T:2-155 HTH HTH winged
e4bpeU1 U:3-126 Bacillus chorismate mutase-like L30e-like L30e-like
e4bpeW2 W:2-118 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4bpeW1 W:119-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4bpeW3 W:178-260 SH3 SH3 SH3
e4bpeY1 Y:1-228 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like

Structural contacts of domain e4bpeL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bpe01 L:x,y,z->0:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4bpeH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol