ECOD: domain e4bpeY1

Domain ID e4bpeY1

A: beta barrels
X: Ribosomal protein L25-like
H: Ribosomal protein L25-like
T: Ribosomal protein L25-like
F: Ribosomal_S6e

UID:	001066550
Type:	Automatic domain
Parent:	e2xzmY1
Range:	Y:1-228
PDB:	4bpe
PDB Description:
Hsap BLAST neighbor:	P62753
Species:

Domains in the same chain:

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e4bpeY1	Y:1-228	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like

Domains in the same PDB:

e4bpe01	0:18-116	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4bpe11	1:3-68	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4bpe21	2:2-208	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e4bpe31	3:2-109	Alpha-lytic protease prodomain-like	Ribosome-binding factor A (RbfA)-related	Ribosome-binding factor A (RbfA)-related
e4bpe32	3:110-197	Alpha-lytic protease prodomain-like	Ribosome-binding factor A (RbfA)-related	Ribosome-binding factor A (RbfA)-related
e4bpe41	4:21-116	Ribosomal protein L25-like	40S ribosomal protein S3A N-terminal domain	40S ribosomal protein S3A N-terminal domain
e4bpe42	4:117-229	T-fold	40S ribosomal protein S3A C-terminal domain	40S ribosomal protein S3A C-terminal domain
e4bpe51	5:2-101	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4bpe62	6:26-81	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4bpe71	7:2-102	HTH	HTH	winged
e4bpe81	8:37-115	HTH	HTH	winged
e4bpe91	9:72-164	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4bpeC3	C:4-103	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e4bpeC1	C:95-231	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e4bpeF1	F:13-101	Glucose permease domain IIB-like	eIF1-like	eIF1-like
e4bpeG1	G:9-200	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e4bpeH1	H:2-67	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e4bpeH2	H:68-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e4bpeJ1	J:13-120	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e4bpeK1	K:12-151	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4bpeL1	L:2-141	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4bpeN1	N:2-55	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4bpeO2	O:2-84	HTH	40S ribosomal protein S13 N-terminal domain	40S ribosomal protein S13 N-terminal domain
e4bpeO1	O:85-153	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e4bpeP1	P:2-149	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e4bpeR1	R:6-343	beta-propeller-like	beta-propeller	7-bladed
e4bpeT1	T:2-155	HTH	HTH	winged
e4bpeU1	U:3-126	Bacillus chorismate mutase-like	L30e-like	L30e-like
e4bpeW2	W:2-118	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e4bpeW1	W:119-177	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4bpeW3	W:178-260	SH3	SH3	SH3
e4bpeY1	Y:1-228	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like

Structural contacts of domain e4bpeY1 of H-group "Ribosomal protein L25-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4bpeW1	Y:x,y,z->W:X,Y,Z	Nucleic acid-binding proteins	Interaction Interface Pymol