Domain ID e4c1nA1

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  • A: a/b three-layered sandwiches
  • X: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
  • H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
  • T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
  • F: CdhD
UID: 001322706
Type: Automatic domain
Parent: e2yclA3
Range: A:316-443
Ligands: B12
PDB: 4c1n
PDB Description: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT
UniProt: Q3ACS3
Species: Carboxydothermus hydrogenoformans

Structure of domain e4c1nA1

Domains in the same chain:

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e4c1nA2 A:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nA3 A:59-315 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nA1 A:316-443 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit

Domains in the same PDB:

e4c1nA2 A:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nA3 A:59-315 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nA1 A:316-443 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nB1 B:2-310 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nC2 C:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nC3 C:59-315 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nC1 C:316-443 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nD1 D:2-310 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nE2 E:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nE3 E:59-315 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nE1 E:316-443 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nF1 F:2-310 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nG2 G:3-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nG3 G:59-315 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nG1 G:316-443 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nH1 H:2-310 TIM beta/alpha-barrel TIM barrels TIM barrels
e4c1nI3 I:122-203 Ribosomal protein L31e-like Reductive activator for corrinoid/iron-sulfur protein second domain Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nI2 I:204-369 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nI1 I:370-630 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nJ3 J:122-203 Ribosomal protein L31e-like Reductive activator for corrinoid/iron-sulfur protein second domain Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nJ2 J:204-369 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nJ1 J:370-630 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nK3 K:121-203 Ribosomal protein L31e-like Reductive activator for corrinoid/iron-sulfur protein second domain Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nK2 K:204-369 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nK1 K:370-630 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nX3 X:122-203 Ribosomal protein L31e-like Reductive activator for corrinoid/iron-sulfur protein second domain Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nX2 X:204-369 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4c1nX1 X:370-630 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Structural contacts of domain e4c1nA1 of H-group "B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4c1nB1 A:X,Y,Z->B:x,y,z TIM barrels Interaction Interface Pymol
e4c1nI1 A:X,Y,Z->I:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4c1nI2 A:X,Y,Z->I:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4c1nJ1 A:x,y,z->J:X-1,Y-1,Z Ribonuclease H-like Interaction Interface Pymol
e4c1nC1 A:x,y,z->C:X,Y-1,Z B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Interaction Interface Pymol
e4c1nH1 A:x,y,z->H:X-1,Y,Z+1 TIM barrels Interaction Interface Pymol