ECOD: domain e4c1nE1

Domain ID e4c1nE1

A: a/b three-layered sandwiches
X: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
F: CdhD

UID:	001322712
Type:	Automatic domain
Parent:	e2yclA3
Range:	E:316-443
Ligands:	B12
PDB:	4c1n
PDB Description:	CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT
UniProt:	Q3ACS3
Species:	Carboxydothermus hydrogenoformans

Domains in the same chain:

Download Pymol

e4c1nE2	E:2-58	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nE3	E:59-315	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nE1	E:316-443	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit

Domains in the same PDB:

e4c1nA2	A:2-58	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nA3	A:59-315	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nA1	A:316-443	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nB1	B:2-310	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nC2	C:2-58	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nC3	C:59-315	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nC1	C:316-443	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nD1	D:2-310	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nE2	E:2-58	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nE3	E:59-315	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nE1	E:316-443	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nF1	F:2-310	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nG2	G:3-58	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nG3	G:59-315	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nG1	G:316-443	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4c1nH1	H:2-310	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4c1nI3	I:122-203	Ribosomal protein L31e-like	Reductive activator for corrinoid/iron-sulfur protein second domain	Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nI2	I:204-369	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nI1	I:370-630	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nJ3	J:122-203	Ribosomal protein L31e-like	Reductive activator for corrinoid/iron-sulfur protein second domain	Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nJ2	J:204-369	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nJ1	J:370-630	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nK3	K:121-203	Ribosomal protein L31e-like	Reductive activator for corrinoid/iron-sulfur protein second domain	Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nK2	K:204-369	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nK1	K:370-630	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nX3	X:122-203	Ribosomal protein L31e-like	Reductive activator for corrinoid/iron-sulfur protein second domain	Reductive activator for corrinoid/iron-sulfur protein second domain
e4c1nX2	X:204-369	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4c1nX1	X:370-630	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Structural contacts of domain e4c1nE1 of H-group "B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4c1nF1	E:X,Y,Z->F:x,y,z	TIM barrels	Interaction Interface Pymol
e4c1nX2	E:X,Y,Z->X:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e4c1nX1	E:X,Y,Z->X:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e4c1nK1	E:x,y,z->K:X-1,Y+1,Z	Ribonuclease H-like	Interaction Interface Pymol
e4c1nG1	E:x,y,z->G:X-1,Y+1,Z	B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit	Interaction Interface Pymol