ECOD: domain e4c3hA1

Domain ID e4c3hA1

A: a+b complex topology
X: N-terminal domain in RNA-polymerase beta-prime subunit
H: N-terminal domain in RNA-polymerase beta-prime subunit
T: N-terminal domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_1

UID:	001117727
Type:	Manual and representative domain
Range:	A:1-463
Ligands:	ZN
PDB:	4c3h
PDB Description:	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190
UniProt:	P10964
Hsap BLAST neighbor:	O95602
Species:	Saccharomyces cerevisiae

Domains in the same chain:

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e4c3hA1	A:1-463	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4c3hA2	A:464-505,A:581-665	cradle loop barrel	RIFT-related	double psi
e4c3hA3	A:506-580	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c3hA4	A:666-826	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4c3hA5	A:827-1053	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4c3hA6	A:1054-1180	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase I RPA190 subunit	third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c3hA7	A:1181-1234,A:1545-1663	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4c3hA8	A:1235-1261,A:1498-1544	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3hA9	A:1262-1497	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

Structural contacts of domain e4c3hA1 of H-group "N-terminal domain in RNA-polymerase beta-prime subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4c3hB2	A:X,Y,Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4c3hB3	A:X,Y,Z->B:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e4c3hE2	A:X,Y,Z->E:x,y,z	Eukaryotic RPB5 N-terminal domain	Interaction Interface Pymol
e4c3hE1	A:X,Y,Z->E:x,y,z	RPB5-like RNA polymerase subunit	Interaction Interface Pymol
e4c3hF1	A:X,Y,Z->F:x,y,z	RPB6/omega subunit-like	Interaction Interface Pymol
e4c3hG2	A:-X,Y,-Z->G:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4c3hG1	A:X,Y,Z->G:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol
e4c3hK1	A:x,y,z->K:X,Y-1,Z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e4c3hD1	A:X,Y,Z->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e4c3hC1	A:x,y,z->C:X,Y-1,Z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e4c3hB2	A:-X,Y,-Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4c3hA1	A:x,y,z->A:-X,Y,-Z	N-terminal domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4c3hA1	A:-X,Y,-Z->A:x,y,z	N-terminal domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol