ECOD: domain e4c3hI2

Domain ID e4c3hI2

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: TFIIS_C

UID:	001108573
Type:	Automatic domain
Parent:	e1tfiA1
Range:	I:68-125
Ligands:	ZN
PDB:	4c3h
PDB Description:	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12
UniProt:	P32529
Hsap BLAST neighbor:	Q9P1U0
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e4c3hI1	I:2-67	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c3hI2	I:68-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

Structural contacts of domain e4c3hI2 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4c3hA9	I:x,y,z->A:X,Y,Z	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4c3hA8	I:x,y,z->A:X,Y,Z	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4c3hA4	I:x,y,z->A:X,Y,Z	first helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4c3hA7	I:x,y,z->A:X,Y,Z	central helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4c3hA5	I:x,y,z->A:X,Y,Z	second helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e4c3hB1	I:x,y,z->B:X,Y,Z	RIFT-related	Interaction Interface Pymol
e4c3hB7	I:x,y,z->B:X,Y,Z	barrel domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4c3hB6	I:x,y,z->B:X,Y,Z	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol

e4c3hA1	A:1-463	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4c3hA2	A:464-505,A:581-665	cradle loop barrel	RIFT-related	double psi
e4c3hA3	A:506-580	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c3hA4	A:666-826	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4c3hA5	A:827-1053	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4c3hA6	A:1054-1180	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase I RPA190 subunit	third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c3hA7	A:1181-1234,A:1545-1663	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4c3hA8	A:1235-1261,A:1498-1544	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3hA9	A:1262-1497	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3hB6	B:12-209,B:401-547	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3hB5	B:210-400	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4c3hB4	B:548-646	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4c3hB7	B:647-761	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4c3hB1	B:762-798,B:912-1040	cradle loop barrel	RIFT-related	double psi
e4c3hB3	B:799-911	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4c3hB2	B:1041-1203	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3hC1	C:30-75,C:222-335	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4c3hC2	C:76-221	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4c3hD1	D:12-49,D:80-100	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4c3hE2	E:1-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e4c3hE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4c3hF1	F:55-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4c3hG1	G:8-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4c3hG2	G:127-316	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4c3hH1	H:3-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4c3hI1	I:2-67	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c3hI2	I:68-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c3hJ1	J:1-69	HTH	RPB10	RPB10
e4c3hK1	K:40-142	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4c3hL1	L:26-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4c3hM1	M:8-114	triple barrel	triple barrel	RNA polymerase I subunits A49/A34.5 dimerization domains
e4c3hN1	N:23-180	triple barrel	triple barrel	RNA polymerase I subunits A49/A34.5 dimerization domains