Domain ID e4c3jF1

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  • A: alpha arrays
  • X: RPB6/omega subunit-like
  • H: RPB6/omega subunit-like
  • T: RPB6
  • F: RNA_pol_Rpb6
UID: 001108630
Type: Automatic domain
Parent: e1qklA1
Range: F:55-154
PDB: 4c3j
PDB Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
UniProt: P20435
Hsap BLAST neighbor: P61218
Species: Saccharomyces cerevisiae

Structure of domain e4c3jF1

Domains in the same chain:

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e4c3jF1 F:55-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6

Domains in the same PDB:

e4c3jA5 A:1-141,A:172-275,A:312-463 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4c3jA3 A:464-505,A:581-665 cradle loop barrel RIFT-related double psi
e4c3jA8 A:506-580 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4c3jA1 A:666-826 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4c3jA2 A:827-1053 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4c3jA4 A:1054-1180 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e4c3jA6 A:1181-1234,A:1545-1663 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4c3jA9 A:1235-1261,A:1498-1544 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3jA7 A:1262-1399,A:1438-1497 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4c3jB1 B:12-209,B:401-547 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3jB7 B:210-400 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4c3jB5 B:548-646 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4c3jB4 B:647-761 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4c3jB2 B:762-798,B:912-1040 cradle loop barrel RIFT-related double psi
e4c3jB3 B:799-911 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4c3jB6 B:1041-1203 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4c3jC1 C:30-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4c3jC2 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4c3jD1 D:12-49,D:80-100 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4c3jE2 E:1-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e4c3jE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4c3jF1 F:55-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4c3jG3 G:8-123 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4c3jG4 G:124-174,G:214-316 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4c3jH1 H:3-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4c3jI1 I:2-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4c3jI2 I:68-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4c3jJ1 J:1-69 HTH RPB10 RPB10
e4c3jK1 K:40-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4c3jL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4c3jM1 M:8-114 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains
e4c3jN1 N:23-180 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains

Structural contacts of domain e4c3jF1 of H-group "RPB6/omega subunit-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1qklA1 F:x,y,z->A:X,Y,Z RPB6/omega subunit-like Interaction Interface Pymol
e1qklA1 F:x,y,z->A:X,Y,Z RPB6/omega subunit-like Interaction Interface Pymol
e1qklA1 F:x,y,z->A:X,Y,Z RPB6/omega subunit-like Interaction Interface Pymol
e1qklA1 F:x,y,z->A:X,Y,Z RPB6/omega subunit-like Interaction Interface Pymol
e1qklA1 F:x,y,z->A:X,Y,Z RPB6/omega subunit-like Interaction Interface Pymol
e1qklA1 F:x,y,z->A:X,Y,Z RPB6/omega subunit-like Interaction Interface Pymol
e4c3jG3 F:X,Y,Z->G:x,y,z Flavin-binding protein dodecin-like Interaction Interface Pymol
e4c3jD1 F:x,y,z->D:X,Y,Z SAM/DNA-glycosylase Interaction Interface Pymol
e4c3jE1 F:x,y,z->E:X,Y,Z RPB5-like RNA polymerase subunit Interaction Interface Pymol
e4c3jB6 F:x,y,z->B:X,Y,Z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol