Domain ID e4djdB1

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Pterin_bind
UID: 000983760
Type: Automatic domain
Parent: e1eyeA1
Range: B:1-262
Ligands: B12 CA
PDB: 4djd
PDB Description: 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase
UniProt: Q46389
Hsap BLAST neighbor: Q99707
Species: Moorella thermoacetica

Structure of domain e4djdB1

Domains in the same chain:

e4djdB1 B:1-262 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e4djdA1 A:1-262 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdB1 B:1-262 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdC3 C:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdC4 C:59-316 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdC1 C:317-442 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdD1 D:1-323 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdE3 E:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdE4 E:59-316 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdE1 E:317-442 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdF1 F:1-323 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e4djdB1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4djdA1 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e4djdF1 B:X,Y,Z->F:x,y,z TIM barrels Interaction Interface Pymol
e4djdE4 B:X,Y,Z->E:x,y,z TIM barrels Interaction Interface Pymol
e4djdE3 B:X,Y,Z->E:x,y,z Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Interaction Interface Pymol
e4djdD1 B:x,y,z->D:X,Y,Z-1 TIM barrels Interaction Interface Pymol
e4djdC4 B:x,y,z->C:X,Y,Z-1 TIM barrels Interaction Interface Pymol
e4djdC4 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e4djdD1 B:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e4djdA1 B:x,y,z->A:X-1/2,-Y+1/2,-Z TIM barrels Interaction Interface Pymol