Domain ID e4djdE1

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  • A: a/b three-layered sandwiches
  • X: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
  • H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
  • T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
  • F: CdhD
UID: 001409774
Type: Automatic domain
Parent: e2yclA3
Range: E:317-442
Ligands: B12
PDB: 4djd
PDB Description: Corrinoid/iron-sulfur protein large subunit
UniProt: Q07340
Species: Moorella thermoacetica

Structure of domain e4djdE1

Domains in the same chain:

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e4djdE3 E:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdE4 E:59-316 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdE1 E:317-442 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit

Domains in the same PDB:

e4djdA1 A:1-262 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdB1 B:1-262 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdC3 C:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdC4 C:59-316 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdC1 C:317-442 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdD1 D:1-323 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdE3 E:2-58 Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdE4 E:59-316 TIM beta/alpha-barrel TIM barrels TIM barrels
e4djdE1 E:317-442 B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit
e4djdF1 F:1-323 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e4djdE1 of H-group "B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4djdF1 E:X,Y,Z->F:x,y,z TIM barrels Interaction Interface Pymol
e4djdA1 E:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol