Domain ID e4dv0Q1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_S17
UID: 001552361
Type: Automatic domain
Parent: e4v4vAQ1
Range: Q:2-78
Ligands: MG
PDB: 4dv0
PDB Description: RIBOSOMAL PROTEIN S17
UniProt: Q5SHP7
Species:

Structure of domain e4dv0Q1

Domains in the same chain:

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e4dv0Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4dv0B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4dv0C2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dv0C1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dv0D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4dv0E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dv0E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv0F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dv0G1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dv0H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dv0H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dv0I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv0J1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dv0K2 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dv0L1 L:1-121 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv0M1 M:2-119 HhH/H2TH H2TH H2TH
e4dv0N1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dv0O2 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dv0P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dv0Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv0R2 R:19-88 HTH HTH tri-helical
e4dv0S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4dv0T1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4dv0Q1 of H-group "Nucleic acid-binding proteins":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dv0L1 Q:x,y,z->L:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e4dv0H2 Q:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol