Domain ID e4dv6E4

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 001277412
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-72
Ligands: MG
PDB: 4dv6
PDB Description: RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4dv6E4

Domains in the same chain:

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e4dv6E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dv6E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4dv6B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4dv6C2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4dv6C1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4dv6D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4dv6E4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4dv6E3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv6F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4dv6G1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4dv6H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4dv6H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4dv6I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dv6J1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4dv6K2 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dv6L1 L:1-121 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv6M1 M:2-119 HhH/H2TH H2TH H2TH
e4dv6N1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4dv6O2 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4dv6P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4dv6Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4dv6R2 R:19-88 HTH HTH tri-helical
e4dv6S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4dv6T1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4dv6E4 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dv6D1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e4dv6E3 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dv6E3 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dv6C1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol