ECOD: domain e4gdkB1

Domain ID e4gdkB1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ATG5_UblA

UID:	000866045
Type:	Automatic domain
Parent:	e2dymA1
Range:	B:3-115
Ligands:	NA
PDB:	4gdk
PDB Description:	Autophagy protein 5
UniProt:	Q9H1Y0
Hsap BLAST neighbor:	Q9H1Y0
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4gdkB1	B:3-115	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4gdkB4	B:116-176	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e4gdkB3	B:177-275	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e4gdkA1	A:53-140	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4gdkB1	B:3-115	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4gdkB4	B:116-176	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e4gdkB3	B:177-275	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4gdkD2	D:54-140	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4gdkE6	E:3-115	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4gdkE8	E:116-176	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e4gdkE7	E:177-274	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e4gdkB1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4gdkA1	B:x,y,z->A:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol
e4gdkB4	B:x,y,z->B:X-1,Y,Z	Helical domain in autophagy protein 5	Interaction Interface Pymol