Domain ID e4io9S2

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  • A: a+b complex topology
  • X: Ribosomal protein TL5/L25 C-terminal domain-like
  • H: Ribosomal protein TL5/L25 C-terminal domain-related
  • T: Ribosomal protein TL5/L25 C-terminal domain-related
  • F: Ribosomal_TL5_C
UID: 001115385
Type: Automatic domain
Parent: e2zjrS3
Range: S:89-175
PDB: 4io9
PDB Description: 50S RIBOSOMAL PROTEIN L25
UniProt: Q9RX88
Species: Deinococcus radiodurans

Structure of domain e4io9S2

Domains in the same chain:

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e4io9S1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4io9S2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Domains in the same PDB:

e4io911 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4io921 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4io931 3:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4io941 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4io9A2 A:33-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4io9A1 A:128-272 SH3 SH3 SH3
e4io9B1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e4io9C1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4io9D1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4io9E1 E:5-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4io9E2 E:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4io9F1 F:74-144 HTH HTH Ribosomal protein L11, C-terminal domain
e4io9G1 G:30-171 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4io9H1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4io9I1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e4io9J1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e4io9K1 K:3-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4io9L1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4io9M1 M:2-109 SH3 SH3 SH3
e4io9N1 N:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4io9O1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4io9P1 P:8-134 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4io9Q1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4io9R1 R:4-113 SH3 SH3 SH3
e4io9S1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4io9S2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e4io9T1 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4io9U1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4io9V1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4io9W1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4io9Z1 Z:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e4io9S2 of H-group "Ribosomal protein TL5/L25 C-terminal domain-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2zjrS3 S:x,y,z->J:X,Y,Z Ribosomal protein TL5/L25 C-terminal domain-related Interaction Interface Pymol
e4io9F1 S:x,y,z->F:X,Y,Z HTH Interaction Interface Pymol