Domain ID e4iqjB2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: PHP
UID: 001308298
Type: Automatic domain
Parent: e1m65A1
Range: B:5-285
Ligands: ZN
PDB: 4iqj
PDB Description: DNA polymerase III subunit alpha
UniProt: Q9XDH5
Species: Thermus aquaticus

Structure of domain e4iqjB2

Domains in the same chain:

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e4iqjB2 B:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjB1 B:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjB3 B:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjB4 B:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjB5 B:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjB6 B:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain

Domains in the same PDB:

e4iqjA2 A:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjA1 A:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjA3 A:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjA4 A:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjA5 A:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjA6 A:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjB2 B:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjB1 B:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjB3 B:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjB4 B:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjB5 B:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjB6 B:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjC2 C:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjC1 C:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjC3 C:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjC4 C:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjC5 C:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjC6 C:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjD2 D:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjD1 D:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjD3 D:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjD4 D:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjD5 D:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjD6 D:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjM1 M:367-456,M:487-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau
e4iqjN2 N:367-456,N:490-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau
e4iqjO2 O:367-456,O:490-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau
e4iqjP2 P:367-459,P:490-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau

Structural contacts of domain e4iqjB2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4iqjB2 B:x,y,z->B:-X+1,Y-1/2,-Z+1 TIM barrels Interaction Interface Pymol
e4iqjB1 B:x,y,z->B:-X+1,Y-1/2,-Z+1 Nucleotidyltransferase Interaction Interface Pymol
e4iqjB2 B:-X+1,Y-1/2,-Z+1->B:x,y,z TIM barrels Interaction Interface Pymol
e4iqjC4 B:x,y,z->C:X,Y-1,Z SAM/DNA-glycosylase Interaction Interface Pymol
e4iqjO2 B:x,y,z->O:X,Y-1,Z C-terminal domain of the DNA polymerase III subunit tau Interaction Interface Pymol