Domain ID e4iqjD1

Download files:
  • A: a+b three layers
  • X: Nucleotidyltransferase-like
  • H: Nucleotidyltransferase
  • T: Nucleotidyltransferase
  • F: DNA_pol3_alpha
UID: 001308309
Type: Automatic domain
Parent: e2hpiA2
Range: D:286-622
Ligands: MG
PDB: 4iqj
PDB Description: DNA polymerase III subunit alpha
UniProt: Q9XDH5
Species: Thermus aquaticus

Structure of domain e4iqjD1

Domains in the same chain:

Download Pymol

e4iqjD2 D:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjD1 D:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjD3 D:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjD4 D:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjD5 D:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjD6 D:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain

Domains in the same PDB:

e4iqjA2 A:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjA1 A:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjA3 A:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjA4 A:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjA5 A:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjA6 A:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjB2 B:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjB1 B:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjB3 B:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjB4 B:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjB5 B:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjB6 B:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjC2 C:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjC1 C:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjC3 C:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjC4 C:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjC5 C:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjC6 C:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjD2 D:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e4iqjD1 D:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e4iqjD3 D:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e4iqjD4 D:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4iqjD5 D:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iqjD6 D:1127-1220 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e4iqjM1 M:367-456,M:487-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau
e4iqjN2 N:367-456,N:490-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau
e4iqjO2 O:367-456,O:490-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau
e4iqjP2 P:367-459,P:490-543 C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau C-terminal domain of the DNA polymerase III subunit tau

Structural contacts of domain e4iqjD1 of H-group "Nucleotidyltransferase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4iqjA1 D:x,y,z->A:X,Y-1,Z Nucleotidyltransferase Interaction Interface Pymol
e4iqjA2 D:x,y,z->A:X,Y-1,Z TIM barrels Interaction Interface Pymol
e4iqjD4 D:-X+1,Y-1/2,-Z->D:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e4iqjD2 D:-X+1,Y-1/2,-Z->D:x,y,z TIM barrels Interaction Interface Pymol
e4iqjB6 D:x,y,z->B:-X+1,Y-1/2,-Z DNA polymerase III C-terminal domain Interaction Interface Pymol
e4iqjC6 D:x,y,z->C:X,Y-1,Z-1 DNA polymerase III C-terminal domain Interaction Interface Pymol
e4iqjD4 D:X,Y-1,Z->D:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol