Domain ID e4jyaD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549961
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
PDB: 4jya
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species:

Structure of domain e4jyaD1

Domains in the same chain:

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e4jyaD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e4jyaB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4jyaC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4jyaC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4jyaD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4jyaE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4jyaE1 E:74-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4jyaF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4jyaG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4jyaH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4jyaH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4jyaI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4jyaJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4jyaK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4jyaL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4jyaM1 M:2-121 HhH/H2TH H2TH H2TH
e4jyaN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4jyaO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4jyaP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4jyaQ1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4jyaR1 R:19-88 HTH HTH tri-helical
e4jyaS1 S:4-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4jyaT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4jyaD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4jyaH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4jyaE1 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol