ECOD: domain e4jyaM1

Domain ID e4jyaM1

A: alpha arrays
X: HhH/H2TH
H: H2TH
T: H2TH
F: Ribosomal_S13

UID:	001552515
Type:	Automatic domain
Parent:	e4v4vAM1
Range:	M:2-121
PDB:	4jya
PDB Description:	30S RIBOSOMAL PROTEIN S13
UniProt:	P80377
Hsap BLAST neighbor:	P62269
Species:

Domains in the same chain:

Download Pymol

e4jyaM1	M:2-121	HhH/H2TH	H2TH	H2TH

Domains in the same PDB:

e4jyaB1	B:7-127,B:157-240	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e4jyaC2	C:2-106	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e4jyaC1	C:107-207	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e4jyaD1	D:2-209	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e4jyaE2	E:5-73	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e4jyaE1	E:74-154	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4jyaF1	F:1-101	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e4jyaG1	G:2-156	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e4jyaH1	H:1-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e4jyaH2	H:67-138	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e4jyaI1	I:2-128	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4jyaJ1	J:3-100	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e4jyaK1	K:11-129	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4jyaL1	L:5-129	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4jyaM1	M:2-121	HhH/H2TH	H2TH	H2TH
e4jyaN1	N:2-61	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4jyaO1	O:2-89	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e4jyaP1	P:1-83	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e4jyaQ1	Q:2-78	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4jyaR1	R:19-88	HTH	HTH	tri-helical
e4jyaS1	S:4-81	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e4jyaT1	T:8-106	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e4jyaM1 of H-group "H2TH":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4jyaS1	M:X,Y,Z->S:x,y,z	Ribosomal protein S19	Interaction Interface Pymol