Domain ID e4k0kE2

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 001064394
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-73
PDB: 4k0k
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4k0kE2

Domains in the same chain:

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e4k0kE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4k0kE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4k0kB1 B:7-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4k0kC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4k0kC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4k0kD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4k0kE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4k0kE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4k0kF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4k0kG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4k0kH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4k0kH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4k0kI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4k0kJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4k0kK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4k0kL1 L:5-130 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4k0kM1 M:2-122 HhH/H2TH H2TH H2TH
e4k0kN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4k0kO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4k0kP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4k0kQ1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4k0kR1 R:19-88 HTH HTH tri-helical
e4k0kS1 S:4-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4k0kT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4k0kE2 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4k0kD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e4k0kE1 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4k0kE1 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4k0kC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol