Domain ID e4kiyE1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001067056
Type: Automatic domain
Parent: e1pkpA2
Range: E:78-159
Ligands: MG
PDB: 4kiy
PDB Description:
Species:

Structure of domain e4kiyE1

Domains in the same chain:

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e4kiyE2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kiyE1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4kiyC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kiyC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kiyE2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kiyE1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kiyF1 F:1-102 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kiyG1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kiyH1 H:2-64 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kiyH2 H:65-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kiyJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kiyK1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kiyL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kiyN1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kiyO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kiyP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kiyR1 R:20-74 HTH HTH tri-helical
e4kiyT1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kiyU1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e4kiyV13 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kiyV15 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kiyV16 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kiyV14 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kiyV2 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kiyE1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kiyH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4kiyH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol