Domain ID e4kiyV16

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: EF-G C-terminal domain-like
  • T: EF-G C-terminal domain-like
  • F: EFG_III
UID: 001207399
Type: Automatic domain
Parent: e1fnmA2
Range: V:412-489
PDB: 4kiy
PDB Description:
Hsap BLAST neighbor: Q96RP9
Species:

Structure of domain e4kiyV16

Domains in the same chain:

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e4kiyV13 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kiyV15 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kiyV16 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kiyV14 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kiyV2 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Domains in the same PDB:

e4kiyC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kiyC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kiyE2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kiyE1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kiyF1 F:1-102 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kiyG1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kiyH1 H:2-64 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kiyH2 H:65-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kiyJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kiyK1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kiyL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kiyN1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kiyO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kiyP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kiyR1 R:20-74 HTH HTH tri-helical
e4kiyT1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kiyU1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e4kiyV13 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kiyV15 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kiyV16 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kiyV14 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kiyV2 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kiyV16 of H-group "EF-G C-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kiyL1 V:x,y,z->L:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol