Domain ID e4kjcK1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 001067468
Type: Automatic domain
Parent: e2uubK1
Range: K:13-129
PDB: 4kjc
PDB Description:
Hsap BLAST neighbor: P82912
Species:

Structure of domain e4kjcK1

Domains in the same chain:

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e4kjcK1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4kjcC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kjcC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kjcE2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kjcE1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kjcF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kjcG1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kjcH1 H:2-64 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kjcH2 H:65-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kjcJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kjcK1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kjcL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kjcN1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kjcO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kjcP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kjcR1 R:20-74 HTH HTH tri-helical
e4kjcT1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kjcU1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e4kjcV9 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjcV11 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kjcV12 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kjcV10 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kjcV2 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kjcK1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kjcU1 K:X,Y,Z->U:x,y,z 30S ribosomal protein S21 Interaction Interface Pymol
e4kjcG1 K:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol
e4kjcR1 K:X,Y,Z->R:x,y,z HTH Interaction Interface Pymol