Domain ID e4nnjA6

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001874171
Type: Automatic domain
Parent: e2nvuB2
Range: A:406-593,A:863-913
Ligands: AMP GOL SO4
PDB: 4nnj
PDB Description: Ubiquitin-activating enzyme E1 1
UniProt: P22515
Hsap BLAST neighbor: P22314
Species:

Structure of domain e4nnjA6

Domains in the same chain:

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e4nnjA5 A:11-174,A:261-284,A:357-405 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e4nnjA3 A:175-260 cradle loop barrel RIFT-related Alanine racemase-C
e4nnjA2 A:285-356 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e4nnjA6 A:406-593,A:863-913 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e4nnjA4 A:594-862 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e4nnjA1 A:914-1024 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e4nnjA5 A:11-174,A:261-284,A:357-405 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e4nnjA3 A:175-260 cradle loop barrel RIFT-related Alanine racemase-C
e4nnjA2 A:285-356 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e4nnjA6 A:406-593,A:863-913 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e4nnjA4 A:594-862 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e4nnjA1 A:914-1024 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e4nnjB1 B:-1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4nnjC5 C:11-174,C:261-284,C:357-405 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e4nnjC3 C:175-260 cradle loop barrel RIFT-related Alanine racemase-C
e4nnjC6 C:285-356 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e4nnjC7 C:406-593,C:863-913 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e4nnjC1 C:594-862 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e4nnjC4 C:914-1024 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e4nnjD1 D:0-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4nnjE1 E:0-76 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e4nnjA6 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4nnjB1 A:X,Y,Z->B:x,y,z Ubiquitin-related Interaction Interface Pymol
e4nnjC4 A:x,y,z->C:-X-1,Y-1/2,-Z-1/2 E2-binding domain of E1 Interaction Interface Pymol