Domain ID e4nvvR1

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  • A: a+b two layers
  • X: Enolase-N/ribosomal protein
  • H: Prokaryotic ribosomal protein L17
  • T: Prokaryotic ribosomal protein L17
  • F: Ribosomal_L17
UID: 001284755
Type: Automatic domain
Parent: e1gd8A1
Range: R:1-118
Ligands: MG
PDB: 4nvv
PDB Description:
Hsap BLAST neighbor: Q9NRX2
Species:

Structure of domain e4nvvR1

Domains in the same chain:

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e4nvvR1 R:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17

Domains in the same PDB:

e4nvv01 0:2-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4nvv11 1:2-98 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4nvv21 2:1-70 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4nvv31 3:2-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4nvv41 4:1-69 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e4nvv51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4nvv71 7:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4nvv81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4nvv91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4nvvD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4nvvD2 D:127-276 SH3 SH3 SH3
e4nvvF1 F:6-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4nvvG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4nvvH1 H:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4nvvH2 H:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4nvvI2 I:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e4nvvI1 I:53-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e4nvvN1 N:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4nvvO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4nvvR1 R:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4nvvU1 U:2-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4nvvV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4nvvW1 W:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4nvvX1 X:1-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4nvvY1 Y:1-107 SH3 SH3 SH3
e4nvvZ1 Z:1-93 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4nvvZ2 Z:94-171 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e4nvvR1 of H-group "Prokaryotic ribosomal protein L17":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4nvv51 R:X,Y,Z->5:x,y,z Rubredoxin-related Interaction Interface Pymol
e4nvvW1 R:X,Y,Z->W:x,y,z Ribosomal protein L22 Interaction Interface Pymol
e4nvvW1 R:x,y,z->E:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e4nvvV1 R:x,y,z->V:X-1/2,-Y-1/2,-Z Ribosomal protein L21p Interaction Interface Pymol