Domain ID e4nxmE2

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 001293002
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-72
Ligands: MG
PDB: 4nxm
PDB Description: ribosomal protein S5
UniProt: Q5SHQ5
Species:

Structure of domain e4nxmE2

Domains in the same chain:

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e4nxmE2 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4nxmE1 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4nxmB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4nxmC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4nxmC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4nxmD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4nxmE2 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4nxmE1 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4nxmF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4nxmG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4nxmH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4nxmH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4nxmI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4nxmJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4nxmK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4nxmL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4nxmM1 M:2-119 HhH/H2TH H2TH H2TH
e4nxmN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4nxmO1 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4nxmP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4nxmQ1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4nxmR1 R:19-88 HTH HTH tri-helical
e4nxmS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4nxmT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4nxmE2 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4nxmE1 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4nxmE1 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4nxmC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol
e4nxmB1 E:x,y,z->B:Y,X,-Z Ribosomal protein S2/SIS domain Interaction Interface Pymol