Domain ID e4qiwB8

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Single hybrid motif
  • F: RNA_pol_Rpb2_6
UID: 001500009
Type: Automatic domain
Parent: e4c2mB6
Range: B:752-876
PDB: 4qiw
PDB Description: DNA-directed RNA polymerase
UniProt: Q5JE32
Hsap BLAST neighbor: P30876
Species:

Structure of domain e4qiwB8

Domains in the same chain:

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e4qiwB2 B:10-172,B:347-485 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4qiwB9 B:173-346 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4qiwB6 B:485-574 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4qiwB3 B:574-713 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4qiwB7 B:714-751,B:877-999 cradle loop barrel RIFT-related double psi
e4qiwB8 B:752-876 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4qiwB5 B:1000-1009,B:1032-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e4qiwA1 A:6-312 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4qiwA3 A:313-499 cradle loop barrel RIFT-related double psi
e4qiwA4 A:500-666 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4qiwA2 A:667-898 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4qiwB2 B:10-172,B:347-485 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4qiwB9 B:173-346 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4qiwB6 B:485-574 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4qiwB3 B:574-713 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4qiwB7 B:714-751,B:877-999 cradle loop barrel RIFT-related double psi
e4qiwB8 B:752-876 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4qiwB5 B:1000-1009,B:1032-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4qiwC2 C:7-59 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4qiwC1 C:60-109,C:268-386 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4qiwC4 C:110-141,C:225-267 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4qiwC3 C:142-224 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4qiwD2 D:1-37,D:149-188,D:208-258 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4qiwD1 D:38-148 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4qiwE2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4qiwE1 E:79-181 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4qiwF1 F:1-122 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4qiwH1 H:6-81 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4qiwI1 I:6-312 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4qiwI3 I:313-499 cradle loop barrel RIFT-related double psi
e4qiwI4 I:500-666 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4qiwI2 I:667-897 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4qiwJ4 J:10-174,J:347-484 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4qiwJ5 J:173-346 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4qiwJ1 J:485-574 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4qiwJ3 J:574-713 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4qiwJ7 J:714-751,J:877-999 cradle loop barrel RIFT-related double psi
e4qiwJ8 J:752-876 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4qiwJ2 J:1000-1009,J:1032-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4qiwK1 K:2-57 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4qiwL1 L:1-94 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4qiwM3 M:7-59 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4qiwM4 M:60-109,M:268-386 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4qiwM2 M:110-141,M:225-267 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4qiwM1 M:142-224 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4qiwN1 N:1-63 HTH RPB10 RPB10
e4qiwO1 O:1-37,O:149-188,O:208-258 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4qiwO2 O:38-148 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4qiwP1 P:8-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4qiwQ2 Q:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4qiwQ1 Q:79-181 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4qiwR1 R:1-122 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4qiwS1 S:6-81 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4qiwT1 T:2-57 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4qiwU1 U:1-94 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4qiwV1 V:1-63 HTH RPB10 RPB10
e4qiwW1 W:8-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related