ECOD: domain e4v8sBA1

Domain ID e4v8sBA1

A: a+b complex topology
X: N-terminal domain in RNA-polymerase beta-prime subunit
H: N-terminal domain in RNA-polymerase beta-prime subunit
T: N-terminal domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_1

UID:	001711491
Type:	Automatic domain
Parent:	e1twfA4
Range:	BA:3-306
Ligands:	ZN
PDB:	4v8s
PDB Description:	DNA-DIRECTED RNA POLYMERASE
UniProt:	B8YB53
Hsap BLAST neighbor:	P24928
Species:

Domains in the same chain:

Download Pymol

e4v8sBA4	BA:307-494	cradle loop barrel	RIFT-related	double psi
e4v8sBA1	BA:3-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4v8sBA2	BA:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4v8sBA3	BA:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit

Domains in the same PDB:

e4v8sAI1	AI:11-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4v8sAJ1	AJ:33-81	YqgQ-like	YqgQ-like	YqgQ-like
e4v8sAM1	AM:1-91	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4v8sAO1	AO:1-65	HTH	RPB10	RPB10
e4v8sAR5	AR:576-715	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4v8sAR4	AR:476-575	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4v8sAR1	AR:753-875	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4v8sAR7	AR:716-752,AR:876-998	cradle loop barrel	RIFT-related	double psi
e4v8sAR3	AR:7-170,AR:345-475	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v8sAR6	AR:999-1125	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v8sAR2	AR:171-344	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4v8sAS1	AS:2-36,AS:159-263	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4v8sAS2	AS:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4v8sAT1	AT:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4v8sAT2	AT:79-178	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4v8sAU1	AU:3-107	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4v8sAV1	AV:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4v8sAW2	AW:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4v8sAW1	AW:3-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4v8sAW3	AW:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4v8sAW4	AW:307-494	cradle loop barrel	RIFT-related	double psi
e4v8sAX1	AX:5-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4v8sAY1	AY:116-147,AY:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v8sAY3	AY:66-115,AY:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4v8sAY4	AY:6-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4v8sAY2	AY:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v8sAZ1	AZ:8-83	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4v8sBA3	BA:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4v8sBA1	BA:3-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4v8sBA2	BA:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4v8sBA4	BA:307-494	cradle loop barrel	RIFT-related	double psi
e4v8sBB4	BB:476-575	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4v8sBB1	BB:999-1125	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v8sBB3	BB:7-170,BB:345-475	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v8sBB2	BB:753-875	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4v8sBB7	BB:171-344	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4v8sBB5	BB:576-715	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4v8sBB6	BB:716-752,BB:876-998	cradle loop barrel	RIFT-related	double psi
e4v8sBC3	BC:6-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4v8sBC1	BC:116-147,BC:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v8sBC2	BC:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v8sBC4	BC:66-115,BC:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4v8sBD1	BD:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4v8sBD2	BD:2-36,BD:159-263	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4v8sBE1	BE:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4v8sBE2	BE:79-178	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4v8sBF1	BF:3-107	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4v8sBG1	BG:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4v8sBH1	BH:8-83	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4v8sBK1	BK:11-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4v8sBL1	BL:1-91	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4v8sBN1	BN:1-65	HTH	RPB10	RPB10
e4v8sBP1	BP:5-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4v8sBQ1	BQ:32-81	YqgQ-like	YqgQ-like	YqgQ-like