Domain ID e5dfeRD1

Download files:
  • A: beta barrels
  • X: SH3
  • H: SH3
  • T: SH3
  • F: Ribosomal_L2_C
UID: 001890825
Type: Automatic domain
Parent: e2zjqA2
Range: RD:127-276
Ligands: MG
PDB: 5dfe
PDB Description: 50S ribosomal protein L2
UniProt: P60405
Hsap BLAST neighbor: Q5T653
Species:

Structure of domain e5dfeRD1

Domains in the same chain:

Download Pymol

e5dfeRD1 RD:127-276 SH3 SH3 SH3
e5dfeRD2 RD:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e5dfeQB1 QB:7-237 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5dfeQC1 QC:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5dfeQC2 QC:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5dfeQD1 QD:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dfeQE2 QE:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5dfeQE1 QE:74-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dfeQF1 QF:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e5dfeQG1 QG:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5dfeQH1 QH:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5dfeQH2 QH:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5dfeQI1 QI:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dfeQJ1 QJ:4-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5dfeQK1 QK:13-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dfeQL1 QL:5-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dfeQM1 QM:2-117 HhH/H2TH H2TH H2TH
e5dfeQN1 QN:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dfeQO1 QO:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5dfeQP1 QP:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e5dfeQQ1 QQ:2-100 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dfeQR1 QR:20-87 HTH HTH tri-helical
e5dfeQS1 QS:2-84 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5dfeQT1 QT:8-103 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e5dfeQY3 QY:226-312 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e5dfeQY1 QY:6-120 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e5dfeQY2 QY:313-362 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e5dfeQY4 QY:121-225 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e5dfeR01 R0:8-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e5dfeR11 R1:2-98 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e5dfeR21 R2:1-70 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5dfeR31 R3:2-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5dfeR41 R4:1-69 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e5dfeR51 R5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dfeR61 R6:2-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dfeR71 R7:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e5dfeR81 R8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e5dfeR91 R9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e5dfeRD2 RD:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dfeRD1 RD:127-276 SH3 SH3 SH3
e5dfeRE1 RE:1-204 cradle loop barrel RIFT-related Alanine racemase-C
e5dfeRF1 RF:6-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5dfeRG1 RG:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5dfeRH1 RH:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dfeRH2 RH:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dfeRI1 RI:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e5dfeRI2 RI:56-147 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e5dfeRN1 RN:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5dfeRO1 RO:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dfeRP1 RP:1-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dfeRQ1 RQ:1-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5dfeRR1 RR:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e5dfeRS1 RS:3-112 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dfeRT1 RT:1-131 SH3 SH3 SH3
e5dfeRU1 RU:2-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e5dfeRV1 RV:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e5dfeRW1 RW:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5dfeRX1 RX:1-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dfeRY1 RY:1-107 SH3 SH3 SH3
e5dfeRZ2 RZ:93-203 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e5dfeRZ1 RZ:1-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5dfeXB1 XB:7-237 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5dfeXC1 XC:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5dfeXC2 XC:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5dfeXD1 XD:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dfeXE1 XE:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5dfeXE2 XE:74-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dfeXF1 XF:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e5dfeXG1 XG:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5dfeXH2 XH:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5dfeXH1 XH:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5dfeXI1 XI:2-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dfeXJ1 XJ:5-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5dfeXK1 XK:13-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dfeXL1 XL:5-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dfeXM1 XM:3-116 HhH/H2TH H2TH H2TH
e5dfeXN1 XN:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dfeXO1 XO:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5dfeXP1 XP:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e5dfeXQ1 XQ:2-100 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dfeXR1 XR:20-87 HTH HTH tri-helical
e5dfeXS1 XS:2-84 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5dfeXT1 XT:6-103 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e5dfeXY4 XY:226-312 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e5dfeXY1 XY:6-120 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e5dfeXY2 XY:313-362 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e5dfeXY3 XY:121-225 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e5dfeY01 Y0:8-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e5dfeY11 Y1:2-98 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e5dfeY21 Y2:1-70 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5dfeY31 Y3:2-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5dfeY41 Y4:1-69 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e5dfeY51 Y5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dfeY61 Y6:2-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dfeY71 Y7:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e5dfeY81 Y8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e5dfeY91 Y9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e5dfeYD2 YD:127-276 SH3 SH3 SH3
e5dfeYD1 YD:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dfeYE1 YE:1-204 cradle loop barrel RIFT-related Alanine racemase-C
e5dfeYF1 YF:6-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5dfeYG1 YG:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5dfeYH2 YH:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dfeYH1 YH:3-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dfeYI1 YI:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e5dfeYI2 YI:56-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e5dfeYN1 YN:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5dfeYO1 YO:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dfeYP1 YP:1-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dfeYQ1 YQ:1-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5dfeYR1 YR:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e5dfeYS1 YS:3-112 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dfeYT1 YT:1-131 SH3 SH3 SH3
e5dfeYU1 YU:2-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e5dfeYV1 YV:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e5dfeYW1 YW:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5dfeYX1 YX:1-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dfeYY1 YY:1-107 SH3 SH3 SH3
e5dfeYZ2 YZ:94-201 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e5dfeYZ1 YZ:1-93 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like