Domain ID e5fj9L1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: DNA_RNApol_7kD
UID: 001715124
Type: Automatic domain
Parent: e1twfL1
Range: L:26-70
Ligands: ZN
PDB: 5fj9
PDB Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4
UniProt: P40422
Hsap BLAST neighbor: P53803
Species: Saccharomyces cerevisiae

Structure of domain e5fj9L1

Domains in the same chain:

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e5fj9L1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e5fj9A6 A:2-358 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fj9A9 A:359-402,A:466-551 cradle loop barrel RIFT-related double psi
e5fj9A7 A:403-465 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fj9A1 A:552-710 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fj9A3 A:711-919 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fj9A8 A:920-1084 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fj9A4 A:1085-1136,A:1318-1460 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fj9A5 A:1137-1164,A:1272-1317 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fj9A2 A:1165-1271 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fj9B3 B:36-200,B:376-516 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fj9B1 B:201-375 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fj9B5 B:517-605 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5fj9B7 B:606-745 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fj9B6 B:746-782,B:907-1029 cradle loop barrel RIFT-related double psi
e5fj9B2 B:783-906 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5fj9B4 B:1030-1149 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fj9C1 C:1-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fj9C2 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5fj9D1 D:1-71,D:98-161 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5fj9E2 E:1-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5fj9E1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5fj9F1 F:71-153 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5fj9G2 G:2-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5fj9G1 G:79-212 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fj9H1 H:1-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fj9I1 I:1-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fj9I2 I:49-110 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fj9J1 J:1-67 HTH RPB10 RPB10
e5fj9K1 K:42-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fj9L1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fj9N1 N:274-315,N:360-422 triple barrel triple barrel Rap30/74 interaction domains-like
e5fj9O5 O:31-129 HTH HTH winged
e5fj9O4 O:130-282 HTH HTH winged
e5fj9O3 O:283-364,O:453-480 HTH HTH winged
e5fj9O1 O:481-567 HTH HTH winged
e5fj9O2 O:568-654 Long alpha-hairpin RPC62 helical hairpin domain RPC62 helical hairpin domain
e5fj9P1 P:171-189,P:215-271 HTH HTH winged