Domain ID e5gm6A6

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  • A: a/b three-layered sandwiches
  • X: Restriction endonuclease-like
  • H: Restriction endonuclease-like
  • T: Restriction endonuclease-like
  • F: U6-snRNA_bdg
UID: 001887238
Type: Automatic domain
Parent: e3zefE3
Range: A:1575-1828
PDB: 5gm6
PDB Description: Pre-mRNA-splicing factor 8
UniProt: P33334
Hsap BLAST neighbor: Q6P2Q9
Species:

Structure of domain e5gm6A6

Domains in the same chain:

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e5gm6A3 A:127-431,A:451-883 Pre-mRNA-splicing factor 8 N-terminal domain Pre-mRNA-splicing factor 8 N-terminal domain Pre-mRNA-splicing factor 8 N-terminal domain
e5gm6A4 A:884-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e5gm6A5 A:1256-1574 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e5gm6A6 A:1575-1828 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e5gm6A1 A:1829-2085 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5gm6A2 A:2149-2413 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like

Domains in the same PDB:

e5gm6a2 a:126-171 CCCH zinc finger CCCH zinc finger CCCH zinc finger
e5gm6a1 a:172-259 RING/U-box-like RING/U-box-like RING/U-box
e5gm6A3 A:127-431,A:451-883 Pre-mRNA-splicing factor 8 N-terminal domain Pre-mRNA-splicing factor 8 N-terminal domain Pre-mRNA-splicing factor 8 N-terminal domain
e5gm6A4 A:884-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e5gm6A5 A:1256-1574 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e5gm6A6 A:1575-1828 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e5gm6A1 A:1829-2085 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5gm6A2 A:2149-2413 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like
e5gm6b1 b:4-170 Cyclophilin-like Cyclophilin-like Cyclophilin-like
e5gm6B11 B:113-192 PWI domain-like Pre-mRNA-splicing helicase BRR2 plug domain Pre-mRNA-splicing helicase BRR2 plug domain
e5gm6B1 B:420-700 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6B3 B:701-907 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6B8 B:907-1003 HTH HTH winged
e5gm6B7 B:1004-1142 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e5gm6B12 B:1142-1199 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e5gm6B6 B:1199-1340 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e5gm6B2 B:1341-1541 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6B4 B:1542-1741 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6B10 B:1740-1824 HTH HTH winged
e5gm6B5 B:1825-1989 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e5gm6B13 B:1989-2049 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e5gm6B9 B:2049-2163 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e5gm6c1 c:9-59 HTH HTH tri-helical
e5gm6c2 c:60-111 HTH HTH tri-helical
e5gm6C1 C:118-456 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6C5 C:457-510,C:530-587 cradle loop barrel RIFT-related Alanine racemase-C
e5gm6C3 C:588-676 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e5gm6C2 C:677-857 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5gm6C4 C:858-975 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e5gm6d1 d:40-275,d:295-297 Repetitive alpha hairpins ARM repeat ARM repeat
e5gm6e1 e:9-94 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5gm6e2 e:96-182 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5gm6F1 F:56-299,F:324-451,F:472-483 beta-propeller-like beta-propeller 7-bladed
e5gm6F4 F:452-784,F:815-851 beta-propeller-like beta-propeller 7-bladed
e5gm6F2 F:852-890,F:918-1231 beta-propeller-like beta-propeller 7-bladed
e5gm6F3 F:1232-1261,F:1298-1361 HTH HTH tri-helical
e5gm6g1 g:15-108 SH3 SH3 SH3
e5gm6G1 G:16-74,G:156-971 Repetitive alpha hairpins ARM repeat ARM repeat
e5gm6h1 h:12-83 SH3 SH3 SH3
e5gm6i1 i:10-92 SH3 SH3 SH3
e5gm6I1 I:1-105 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e5gm6j1 j:2-76 SH3 SH3 SH3
e5gm6J1 J:2-18,J:42-54,J:82-104 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5gm6J3 J:21-27,J:55-70 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5gm6J2 J:28-43,J:71-83 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5gm6k1 k:4-55,k:75-102 SH3 SH3 SH3
e5gm6K1 K:1-84 RDS3 complex subunit 10 RDS3 complex subunit 10 RDS3 complex subunit 10
e5gm6l1 l:4-85 SH3 SH3 SH3
e5gm6m1 m:1-48,m:76-109 SH3 SH3 SH3
e5gm6O1 O:111-447 beta-propeller-like beta-propeller 7-bladed
e5gm6q1 q:1-61 RING/U-box-like RING/U-box-like RING/U-box
e5gm6q2 q:144-493 beta-propeller-like beta-propeller 8-bladed
e5gm6Q1 Q:3-126 RING/U-box-like RING/U-box-like FYVE/PHD zinc finger
e5gm6Q2 Q:202-264,Q:288-296 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5gm6r1 r:1-51 RING/U-box-like RING/U-box-like RING/U-box
e5gm6R2 R:1-129 CCCH zinc finger CCCH zinc finger CCCH zinc finger
e5gm6R1 R:130-227 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5gm6T1 T:1-157 Pre-mRNA-splicing factor BUD31 Pre-mRNA-splicing factor BUD31 Pre-mRNA-splicing factor BUD31
e5gm6U1 U:22-206 SMAD/FHA domain SMAD/FHA domain SMAD/FHA domain
e5gm6v1 v:551-753 Repetitive alpha hairpins ARM repeat ARM repeat
e5gm6V1 V:2-129 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5gm6Y3 Y:210-401,Y:575-609 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6Y2 Y:402-574 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5gm6Y1 Y:610-755 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e5gm6Y4 Y:756-868 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5gm6Z1 Z:8-247 Repetitive alpha hairpins ARM repeat ARM repeat
e5gm6Z2 Z:279-485 Repetitive alpha hairpins ARM repeat ARM repeat