ECOD: domain e5iyaB7

Domain ID e5iyaB7

A: a+b complex topology
X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase
H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase
T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase
F: RNA_pol_Rpb2_6,RNA_pol_Rpb2_7

UID:	001831778
Type:	Automatic domain
Parent:	e1smyC7
Range:	B:1054-1174
Ligands:	ZN
PDB:	5iya
PDB Description:	DNA-directed RNA polymerase II subunit RPB2
UniProt:	P30876
Hsap BLAST neighbor:	P30876
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e5iyaB6	B:10-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB3	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB1	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5iyaB4	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB2	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e5iyaB5	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5iyaB7	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5iyaA2	A:10-157,A:180-350	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5iyaA7	A:351-388,A:450-533	cradle loop barrel	RIFT-related	double psi
e5iyaA4	A:389-449	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iyaA8	A:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5iyaA3	A:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5iyaA9	A:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iyaA1	A:1083-1135,A:1361-1485	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5iyaA5	A:1136-1164,A:1298-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iyaA6	A:1165-1297	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iyaB6	B:10-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB3	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB1	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5iyaB4	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB2	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e5iyaB5	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5iyaB7	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iyaC2	C:1-42,C:179-275	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5iyaC1	C:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5iyaD1	D:14-142	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5iyaE1	E:1-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5iyaE2	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5iyaF1	F:42-127	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5iyaG2	G:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5iyaG1	G:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5iyaH1	H:1-150	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5iyaI1	I:1-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iyaI2	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iyaJ1	J:1-67	HTH	RPB10	RPB10
e5iyaK1	K:1-117	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5iyaL1	L:13-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iyaM3	M:7-54	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iyaM2	M:105-207	HTH	HTH	Cyclin-like
e5iyaM1	M:208-316	HTH	HTH	Cyclin-like
e5iyaN1	N:9-51,N:308-321	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5iyaN2	N:322-376	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5iyaO2	O:1-53	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5iyaO1	O:54-99	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5iyaP1	P:153-255	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5iyaP2	P:256-337	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5iyaQ2	Q:11-100,Q:175-204	HTH	HTH	winged
e5iyaQ1	Q:101-174	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iyaR1	R:75-146	HTH	HTH	winged
e5iyaR2	R:147-206	HTH	HTH	winged
e5iyaR3	R:208-239	HTH	HTH	winged
e5iyaS1	S:5-54,S:93-180	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5iyaT1	T:2-119	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5iyaT2	T:175-238	HTH	HTH	winged
e5iyaU3	U:132-239	RuvA-C	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5iyaU2	U:242-301	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related