Domain ID e5iyaI1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: RNA_POL_M_15KD
UID: 001831788
Type: Automatic domain
Parent: e1twfI1
Range: I:1-59
Ligands: ZN
PDB: 5iya
PDB Description: DNA-directed RNA polymerase II subunit RPB9
UniProt: P36954
Hsap BLAST neighbor: P36954
Species: Homo sapiens

Structure of domain e5iyaI1

Domains in the same chain:

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e5iyaI1 I:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iyaI2 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e5iyaA2 A:10-157,A:180-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5iyaA7 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e5iyaA4 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iyaA8 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5iyaA3 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5iyaA9 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iyaA1 A:1083-1135,A:1361-1485 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5iyaA5 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iyaA6 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iyaB6 B:10-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB3 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB1 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5iyaB4 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iyaB2 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5iyaB5 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5iyaB7 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iyaC2 C:1-42,C:179-275 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iyaC1 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5iyaD1 D:14-142 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5iyaE1 E:1-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5iyaE2 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5iyaF1 F:42-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5iyaG2 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5iyaG1 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iyaH1 H:1-150 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iyaI1 I:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iyaI2 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iyaJ1 J:1-67 HTH RPB10 RPB10
e5iyaK1 K:1-117 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iyaL1 L:13-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iyaM3 M:7-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iyaM2 M:105-207 HTH HTH Cyclin-like
e5iyaM1 M:208-316 HTH HTH Cyclin-like
e5iyaN1 N:9-51,N:308-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iyaN2 N:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iyaO2 O:1-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iyaO1 O:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iyaP1 P:153-255 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iyaP2 P:256-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iyaQ2 Q:11-100,Q:175-204 HTH HTH winged
e5iyaQ1 Q:101-174 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iyaR1 R:75-146 HTH HTH winged
e5iyaR2 R:147-206 HTH HTH winged
e5iyaR3 R:208-239 HTH HTH winged
e5iyaS1 S:5-54,S:93-180 triple barrel triple barrel Rap30/74 interaction domains-like
e5iyaT1 T:2-119 triple barrel triple barrel Rap30/74 interaction domains-like
e5iyaT2 T:175-238 HTH HTH winged
e5iyaU3 U:132-239 RuvA-C Elongation factor TFIIS domain 2/ Kix domain of creb binding protein Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5iyaU2 U:242-301 Rubredoxin-like Rubredoxin-related Rubredoxin-related