Domain ID e5mdnA1

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 001933900
Type: Automatic domain
Parent: e1tgoA3
Range: A:622-766
PDB: 5mdn
PDB Description: DNA polymerase
UniProt: A3MV07
Hsap BLAST neighbor: P09884
Species: Pyrobaculum calidifontis

Structure of domain e5mdnA1

Domains in the same chain:

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e5mdnA5 A:1-38,A:114-129,A:154-156 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5mdnA6 A:39-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e5mdnA2 A:157-368 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5mdnA4 A:369-467,A:523-621 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e5mdnA3 A:468-522 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e5mdnA1 A:622-766 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e5mdnA5 A:1-38,A:114-129,A:154-156 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5mdnA6 A:39-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e5mdnA2 A:157-368 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5mdnA4 A:369-467,A:523-621 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e5mdnA3 A:468-522 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e5mdnA1 A:622-766 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e5mdnB2 B:1-38,B:114-129,B:154-156 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5mdnB1 B:39-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e5mdnB6 B:157-368 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5mdnB3 B:369-467,B:523-621 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e5mdnB5 B:468-522 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e5mdnB4 B:622-766 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I