ECOD: domain e5mdnB4

Domain ID e5mdnB4

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A: alpha bundles
X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
F: DNA_pol_B

UID:	001933909
Type:	Automatic domain
Parent:	e1tgoA3
Range:	B:622-766
PDB:	5mdn
PDB Description:	DNA polymerase
UniProt:	A3MV07
Hsap BLAST neighbor:	P09884
Species:	Pyrobaculum calidifontis

Domains in the same chain:

e5mdnB2	B:1-38,B:114-129,B:154-156	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5mdnB1	B:39-113	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e5mdnB6	B:157-368	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e5mdnB3	B:369-467,B:523-621	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e5mdnB5	B:468-522	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e5mdnB4	B:622-766	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e5mdnA5	A:1-38,A:114-129,A:154-156	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5mdnA6	A:39-113	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e5mdnA2	A:157-368	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e5mdnA4	A:369-467,A:523-621	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e5mdnA3	A:468-522	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e5mdnA1	A:622-766	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I
e5mdnB2	B:1-38,B:114-129,B:154-156	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5mdnB1	B:39-113	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e5mdnB6	B:157-368	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e5mdnB3	B:369-467,B:523-621	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e5mdnB5	B:468-522	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e5mdnB4	B:622-766	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I