Domain ID e5ndgD81

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_S28e
UID: 002140921
Type: Automatic domain
Parent: e1ny4A1
Range: D8:5-67
PDB: 5ndg
PDB Description: 40S ribosomal protein S28-A
UniProt: Q3E7X9
Hsap BLAST neighbor: P62857
Species: Saccharomyces cerevisiae

Structure of domain e5ndgD81

Domains in the same chain:

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e5ndgD81 D8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e5ndgc01 c0:1-92 HTH HTH winged
e5ndgC01 C0:1-92 HTH HTH winged
e5ndgc11 c1:2-147 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgC11 C1:4-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgc21 c2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5ndgC21 C2:24-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5ndgc32 c3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5ndgc31 c3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5ndgC31 C3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5ndgC32 C3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5ndgc41 c4:10-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5ndgC41 C4:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5ndgc51 c5:14-132 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5ndgC51 C5:10-131 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5ndgc61 c6:3-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5ndgC61 C6:3-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5ndgc71 c7:2-122 HTH HTH FF domain
e5ndgC71 C7:2-123 HTH HTH FF domain
e5ndgc81 c8:2-66,c8:90-146 HhH/H2TH H2TH H2TH
e5ndgC81 C8:2-146 HhH/H2TH H2TH H2TH
e5ndgc91 c9:2-144 HTH HTH winged
e5ndgC91 C9:2-144 HTH HTH winged
e5ndgd01 d0:19-119 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5ndgD01 D0:17-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5ndgd11 d1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5ndgD11 D1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5ndgd22 d2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5ndgd21 d2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5ndgD22 D2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5ndgD21 D2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5ndgd31 d3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgD31 D3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgd41 d4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5ndgD41 D4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5ndgd51 d5:37-105 HTH HTH winged
e5ndgD51 D5:36-105 HTH HTH winged
e5ndgd61 d6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5ndgD61 D6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5ndgd71 d7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgD71 D7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgd81 d8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgD81 D8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgd91 d9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5ndgD91 D9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5ndge01 e0:2-61 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5ndgE01 E0:2-61 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5ndge11 e1:80-91,e1:120-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgE11 E1:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgl21 l2:99-253 SH3 SH3 SH3
e5ndgl22 l2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgL21 L2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgL22 L2:99-253 SH3 SH3 SH3
e5ndgl31 l3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5ndgL31 L3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5ndgl43 l4:2-275 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5ndgl42 l4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5ndgL43 L4:2-275 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5ndgL42 L4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5ndgl51 l5:4-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5ndgL51 L5:2-295 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5ndgl61 l6:2-176 SH3 SH3 SH3
e5ndgL61 L6:2-109,L6:129-176 SH3 SH3 SH3
e5ndgl71 l7:22-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5ndgL71 L7:23-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5ndgl81 l8:24-254 Bacillus chorismate mutase-like L30e-like L30e-like
e5ndgL81 L8:24-256 Bacillus chorismate mutase-like L30e-like L30e-like
e5ndgl92 l9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5ndgl91 l9:86-190 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5ndgL91 L9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5ndgL92 L9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5ndgm01 m0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5ndgM01 M0:2-219 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5ndgm11 m1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5ndgM11 M1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5ndgm31 m3:2-195 RPL13 RPL13 RPL13
e5ndgM31 M3:2-194 RPL13 RPL13 RPL13
e5ndgm41 m4:2-138 SH3 SH3 SH3
e5ndgM41 M4:3-138 SH3 SH3 SH3
e5ndgm51 m5:2-175 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5ndgM51 M5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5ndgm61 m6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5ndgM61 M6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5ndgm71 m7:2-184 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5ndgM71 M7:2-184 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5ndgm81 m8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5ndgM81 M8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5ndgm92 m9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5ndgm91 m9:57-184 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5ndgM91 M9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5ndgM92 M9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5ndgn02 n0:1-69 GP2-like RplX-like RplX-like
e5ndgn01 n0:70-172 GP2-like RplX-like RplX-like
e5ndgN01 N0:70-172 GP2-like RplX-like RplX-like
e5ndgN02 N0:3-69 GP2-like RplX-like RplX-like
e5ndgn11 n1:2-160 SH3 SH3 SH3
e5ndgN11 N1:2-160 SH3 SH3 SH3
e5ndgn21 n2:11-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5ndgN21 N2:11-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5ndgn31 n3:4-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5ndgN31 N3:3-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5ndgn41 n4:1-132 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5ndgN41 N4:1-130 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5ndgn51 n5:23-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5ndgN51 N5:22-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5ndgn61 n6:2-125 SH3 SH3 SH3
e5ndgN61 N6:2-127 SH3 SH3 SH3
e5ndgn71 n7:2-136 SH3 SH3 SH3
e5ndgN71 N7:2-136 SH3 SH3 SH3
e5ndgn81 n8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5ndgN81 N8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5ndgn91 n9:2-59 RPL29 RPL29 RPL29
e5ndgN91 N9:2-59 RPL29 RPL29 RPL29
e5ndgo01 o0:6-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5ndgO01 O0:9-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5ndgo11 o1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5ndgO11 O1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5ndgo21 o2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5ndgO21 O2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5ndgo31 o3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5ndgO31 O3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5ndgo41 o4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5ndgO41 O4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5ndgo51 o5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5ndgO51 O5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5ndgo61 o6:24-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5ndgO61 O6:2-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5ndgo71 o7:2-83 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgO71 O7:2-85 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgo81 o8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5ndgO81 O8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5ndgo91 o9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5ndgO91 O9:3-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5ndgp01 p0:3-107,p0:184-216 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e5ndgq01 q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgQ01 Q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgq11 q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5ndgQ11 Q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5ndgq21 q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgQ21 Q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgq31 q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgQ31 Q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5ndgs01 s0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5ndgS01 S0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5ndgs12 s1:114-235 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5ndgs11 s1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5ndgS11 S1:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5ndgS12 S1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5ndgs22 s2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5ndgs21 s2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5ndgs23 s2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5ndgS22 S2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5ndgS21 S2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5ndgS23 S2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5ndgs31 s3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5ndgs32 s3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5ndgS31 S3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5ndgS32 S3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5ndgs42 s4:176-261 SH3 SH3 SH3
e5ndgs41 s4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5ndgs43 s4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgS41 S4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5ndgS42 S4:176-261 SH3 SH3 SH3
e5ndgS43 S4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5ndgs51 s5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5ndgS51 S5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5ndgs61 s6:1-218 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5ndgS61 S6:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5ndgs71 s7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5ndgs72 s7:3-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5ndgS72 S7:4-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5ndgS71 S7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5ndgs81 s8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5ndgS81 S8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5ndgs91 s9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5ndgS91 S9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5ndgsM1 sM:23-137 Suppressor protein STM1 Suppressor protein STM1 Suppressor protein STM1
e5ndgSM1 SM:21-168 Suppressor protein STM1 Suppressor protein STM1 Suppressor protein STM1
e5ndgsR1 sR:7-319 beta-propeller-like beta-propeller 7-bladed
e5ndgSR1 SR:2-319 beta-propeller-like beta-propeller 7-bladed