ECOD: domain e5oikB5

Domain ID e5oikB5

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: RNA_pol_Rpb2_6

UID:	002117223
Type:	Automatic domain
Parent:	e1twfB1
Range:	B:769-805,B:930-1053
PDB:	5oik
PDB Description:	DNA-directed RNA polymerase subunit beta
UniProt:	A5PJW8
Hsap BLAST neighbor:	P30876
Species:	Bos taurus

Domains in the same chain:

Download Pymol

e5oikB6	B:16-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oikB1	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oikB3	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5oikB7	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oikB5	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e5oikB4	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5oikB2	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5oikA2	A:11-155,A:181-350	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5oikA5	A:351-388,A:450-533	cradle loop barrel	RIFT-related	double psi
e5oikA6	A:389-449	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5oikA9	A:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5oikA8	A:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5oikA1	A:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5oikA4	A:1083-1135,A:1361-1487	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5oikA7	A:1136-1164,A:1298-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oikA3	A:1165-1297	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oikB6	B:16-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oikB1	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oikB3	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5oikB7	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oikB5	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e5oikB4	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5oikB2	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oikC1	C:2-42,C:179-271	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5oikC2	C:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5oikD1	D:14-141	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5oikE2	E:2-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5oikE1	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5oikF1	F:46-127	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5oikG1	G:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5oikG2	G:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5oikH1	H:2-149	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5oikI1	I:9-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oikI2	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oikJ1	J:1-67	HTH	RPB10	RPB10
e5oikK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5oikL1	L:14-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oikY1	Y:2-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oikZ2	Z:176-269	Alpha-beta plaits	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain
e5oikZ1	Z:270-396	SH3	SH3	SH3
e5oikZ4	Z:416-470	SH3	SH3	SH3
e5oikZ3	Z:471-526	SH3	SH3	SH3
e5oikZ7	Z:527-580	SH3	SH3	SH3
e5oikZ5	Z:581-646	SH3	SH3	SH3
e5oikZ6	Z:703-754	SH3	SH3	SH3