Domain ID e5oikL1

Download files:
  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: DNA_RNApol_7kD
UID: 002117239
Type: Automatic domain
Parent: e1twfL1
Range: L:14-58
Ligands: ZN
PDB: 5oik
PDB Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4
UniProt: Q3ZBC0
Hsap BLAST neighbor: P53803
Species: Bos taurus

Structure of domain e5oikL1

Domains in the same chain:

Download Pymol

e5oikL1 L:14-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e5oikA2 A:11-155,A:181-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5oikA5 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e5oikA6 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5oikA9 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5oikA8 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5oikA1 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5oikA4 A:1083-1135,A:1361-1487 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5oikA7 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oikA3 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oikB6 B:16-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oikB1 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oikB3 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5oikB7 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oikB5 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5oikB4 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5oikB2 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oikC1 C:2-42,C:179-271 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5oikC2 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5oikD1 D:14-141 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5oikE2 E:2-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5oikE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5oikF1 F:46-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5oikG1 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5oikG2 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5oikH1 H:2-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5oikI1 I:9-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oikI2 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oikJ1 J:1-67 HTH RPB10 RPB10
e5oikK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5oikL1 L:14-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oikY1 Y:2-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oikZ2 Z:176-269 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e5oikZ1 Z:270-396 SH3 SH3 SH3
e5oikZ4 Z:416-470 SH3 SH3 SH3
e5oikZ3 Z:471-526 SH3 SH3 SH3
e5oikZ7 Z:527-580 SH3 SH3 SH3
e5oikZ5 Z:581-646 SH3 SH3 SH3
e5oikZ6 Z:703-754 SH3 SH3 SH3