ECOD: domain e5opth1

Domain ID e5opth1

A: a+b two layers
X: Alpha-beta plaits
H: RNA-binding domain, RBD
T: RNA-binding domain, RBD
F: RRM_1

UID:	002137361
Type:	Automatic domain
Parent:	e2cqbA1
Range:	h:68-140
PDB:	5opt
PDB Description:	RNA-binding protein, putative
UniProt:	Q4DY32
Species:

Domains in the same chain:

Download Pymol

e5opth1	h:68-140	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5opth2	h:141-220	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5opth3	h:221-240	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Domains in the same PDB:

e5opta1	a:41-110	HTH	HTH	winged
e5optb1	b:1-164	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e5optc1	c:7-66	40S ribosomal protein S30 (S30e)	40S ribosomal protein S30 (S30e)	40S ribosomal protein S30 (S30e)
e5optd2	d:37-115	N-terminal region in 40S ribosomal protein rpS2 (S5p)	N-terminal region in 40S ribosomal protein rpS2 (S5p)	N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5optd3	d:116-182	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e5optd1	d:183-259	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e5opte2	e:2-67	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e5opte1	e:68-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e5optf1	f:4-210	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e5optg1	g:4-86	40S ribosomal protein rpS21 (S21e)	40S ribosomal protein rpS21 (S21e)	40S ribosomal protein rpS21 (S21e)
e5opth1	h:68-140	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5opth2	h:141-220	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5opth3	h:221-240	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5opti1	i:21-141	Bacillus chorismate mutase-like	L30e-like	L30e-like
e5optj1	j:86-149	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5optk1	k:58-175	HTH	HTH	FF domain
e5optl1	l:15-113	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e5optL2	L:2-113	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e5optL1	L:114-172	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5optL3	L:173-259	SH3	SH3	SH3
e5optm2	m:6-90	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e5optm1	m:91-205	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e5optM1	M:2-143	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5optn1	n:7-99	HTH	HTH	winged
e5opto1	o:12-151	HTH	HTH	winged
e5optO1	O:1-190	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e5optp1	p:5-314	beta-propeller-like	beta-propeller	7-bladed
e5optP1	P:1-249	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like
e5optq1	q:20-57	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e5optQ2	Q:3-110	Alpha-lytic protease prodomain-like	40S ribosomal protein S7-A	40S ribosomal protein S7-A
e5optQ1	Q:102-202	Alpha-lytic protease prodomain-like	40S ribosomal protein S7-A	40S ribosomal protein S7-A
e5optr1	r:10-149	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e5optR1	R:2-82	HTH	40S ribosomal protein S13 N-terminal domain	40S ribosomal protein S13 N-terminal domain
e5optR2	R:83-142	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e5optS1	S:5-86	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5optt1	t:16-134	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e5optT1	T:1-104	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e5optu1	u:8-78,u:99-127	HhH/H2TH	H2TH	H2TH
e5optU1	U:45-112	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5optV1	V:9-143	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e5optW2	W:22-115	Ribosomal protein L25-like	40S ribosomal protein S3A N-terminal domain	40S ribosomal protein S3A N-terminal domain
e5optW1	W:116-238	T-fold	40S ribosomal protein S3A C-terminal domain	40S ribosomal protein S3A C-terminal domain
e5optX1	X:11-158	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5optY1	Y:4-126	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e5optZ1	Z:2-116,Z:157-216	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related