Domain ID e5oqmA3

Download files:
  • A: a+b two layers
  • X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
  • H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
  • T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_7
UID: 002325248
Type: Automatic domain
Parent: e1twfA3
Range: A:1142-1272
PDB: 5oqm
PDB Description: DNA-directed RNA polymerase II subunit RPB1
UniProt: P04050
Hsap BLAST neighbor: P24928
Species:

Structure of domain e5oqmA3

Domains in the same chain:

Download Pymol

e5oqmA5 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5oqmA6 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5oqmA2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5oqmA1 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5oqmA8 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5oqmA4 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5oqmA9 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5oqmA7 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqmA3 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5oqm03 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqm31 3:8-79 RING/U-box-like RING/U-box-like RING/U-box
e5oqm32 3:80-145 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e5oqm41 4:22-285 HAD domain-like HAD domain-related vWA-like
e5oqm42 4:286-323 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqm51 5:2-67 TFB5-related TFB5-related TFB5-related
e5oqm62 6:123-307 HAD domain-like HAD domain-related vWA-like
e5oqm63 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqm61 6:375-457 RING/U-box-like RING/U-box-like Cysteine-rich domain
e5oqm73 7:363-545 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqm71 7:546-722 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqm72 7:723-770 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqma1 a:10-52,a:100-203,a:277-289 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6
e5oqmA5 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5oqmA6 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5oqmA2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5oqmA1 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5oqmA8 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5oqmA4 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5oqmA9 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5oqmA7 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqmA3 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqmb1 b:31-171,b:195-210 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8
e5oqmB4 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqmB3 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oqmB7 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5oqmB2 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oqmB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5oqmB1 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5oqmB5 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqmc1 c:4-111 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11
e5oqmC2 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5oqmC1 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5oqmd1 d:199-684 Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 17
e5oqmD1 D:24-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5oqme1 e:2-93,e:159-301 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e5oqmE2 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5oqmE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5oqmf1 f:2-209 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e5oqmF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5oqmg1 g:2-118 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22
e5oqmG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5oqmG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5oqmH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5oqmi2 i:16-73 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e5oqmi1 i:113-211 Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region
e5oqmI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqmI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqmJ1 J:1-65 HTH RPB10 RPB10
e5oqmK1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5oqmL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqmM1 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqmM2 M:67-218 HTH HTH Cyclin-like
e5oqmM3 M:233-326 HTH HTH Cyclin-like
e5oqmn1 n:3-138 Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21)
e5oqmo1 o:20-94 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e5oqmO2 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5oqmO1 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5oqmQ1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e5oqmR1 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5oqmR2 R:291-351 HTH HTH winged
e5oqmU2 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5oqmU1 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5oqmV2 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5oqmV1 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5oqmX1 X:123-188 HTH HTH winged
e5oqmX2 X:189-249 HTH HTH winged
e5oqmX3 X:250-283 HTH HTH winged