ECOD: domain e5oqmM1

Domain ID e5oqmM1

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: TF_Zn_Ribbon

UID:	002325276
Type:	Automatic domain
Parent:	e1pftA1
Range:	M:16-68
Ligands:	ZN
PDB:	5oqm
PDB Description:	Transcription initiation factor IIB
UniProt:	P29055
Hsap BLAST neighbor:	Q00403
Species:

Domains in the same chain:

Download Pymol

e5oqmM1	M:16-68	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqmM2	M:67-218	HTH	HTH	Cyclin-like
e5oqmM3	M:233-326	HTH	HTH	Cyclin-like

Domains in the same PDB:

e5oqm03	0:503-723	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5oqm31	3:8-79	RING/U-box-like	RING/U-box-like	RING/U-box
e5oqm32	3:80-145	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers
e5oqm41	4:22-285	HAD domain-like	HAD domain-related	vWA-like
e5oqm42	4:286-323	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqm51	5:2-67	TFB5-related	TFB5-related	TFB5-related
e5oqm62	6:123-307	HAD domain-like	HAD domain-related	vWA-like
e5oqm63	6:308-374	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqm61	6:375-457	RING/U-box-like	RING/U-box-like	Cysteine-rich domain
e5oqm73	7:363-545	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5oqm71	7:546-722	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5oqm72	7:723-770	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5oqma1	a:10-52,a:100-203,a:277-289	Mediator of RNA polymerase II transcription subunit 6	Mediator of RNA polymerase II transcription subunit 6	Mediator of RNA polymerase II transcription subunit 6
e5oqmA5	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5oqmA6	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e5oqmA2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5oqmA1	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5oqmA8	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5oqmA4	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5oqmA9	A:1060-1112,A:1331-1452	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5oqmA7	A:1113-1141,A:1273-1330	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqmA3	A:1142-1272	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqmb1	b:31-171,b:195-210	Mediator of RNA polymerase II transcription subunit 8	Mediator of RNA polymerase II transcription subunit 8	Mediator of RNA polymerase II transcription subunit 8
e5oqmB4	B:20-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqmB3	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oqmB7	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5oqmB2	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oqmB6	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e5oqmB1	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5oqmB5	B:1098-1223	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqmc1	c:4-111	Mediator of RNA polymerase II transcription subunit 11	Mediator of RNA polymerase II transcription subunit 11	Mediator of RNA polymerase II transcription subunit 11
e5oqmC2	C:4-41,C:173-265	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5oqmC1	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5oqmd1	d:199-684	Mediator of RNA polymerase II transcription subunit 17	Mediator of RNA polymerase II transcription subunit 17	Mediator of RNA polymerase II transcription subunit 17
e5oqmD1	D:24-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5oqme1	e:2-93,e:159-301	mRNA triphosphatase CET1-related	mRNA triphosphatase CET1-related	mRNA triphosphatase CET1-related
e5oqmE2	E:3-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5oqmE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5oqmf1	f:2-209	mRNA triphosphatase CET1-related	mRNA triphosphatase CET1-related	mRNA triphosphatase CET1-related
e5oqmF1	F:72-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5oqmg1	g:2-118	Mediator of RNA polymerase II transcription subunit 22	Mediator of RNA polymerase II transcription subunit 22	Mediator of RNA polymerase II transcription subunit 22
e5oqmG1	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5oqmG2	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5oqmH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5oqmi2	i:16-73	Mediator of RNA polymerase II transcription submodule Med7N/31	Mediator of RNA polymerase II transcription submodule Med7N/31	Mediator of RNA polymerase II transcription submodule Med7N/31
e5oqmi1	i:113-211	Mediator hinge subcomplex-like	Mediator hinge subcomplex-like	MED7 hinge region
e5oqmI2	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqmI1	I:50-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqmJ1	J:1-65	HTH	RPB10	RPB10
e5oqmK1	K:1-112	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5oqmL1	L:26-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqmM1	M:16-68	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5oqmM2	M:67-218	HTH	HTH	Cyclin-like
e5oqmM3	M:233-326	HTH	HTH	Cyclin-like
e5oqmn1	n:3-138	Mediator hinge subcomplex-like	Mediator hinge subcomplex-like	RNA polymerase II holoenzyme component SRB7 (MED21)
e5oqmo1	o:20-94	Mediator of RNA polymerase II transcription submodule Med7N/31	Mediator of RNA polymerase II transcription submodule Med7N/31	Mediator of RNA polymerase II transcription submodule Med7N/31
e5oqmO2	O:61-156	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5oqmO1	O:157-240	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5oqmQ1	Q:21-35,Q:97-142,Q:327-415	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5oqmR1	R:58-138,R:207-227	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5oqmR2	R:291-351	HTH	HTH	winged
e5oqmU2	U:2-47	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5oqmU1	U:241-286	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5oqmV2	V:5-54	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5oqmV1	V:55-119	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5oqmX1	X:123-188	HTH	HTH	winged
e5oqmX2	X:189-249	HTH	HTH	winged
e5oqmX3	X:250-283	HTH	HTH	winged