Domain ID e5vvrA9

Download files:
  • A: a+b complex topology
  • X: first helical domain in RNA-polymerase beta-prime subunit
  • H: first helical domain in RNA-polymerase beta-prime subunit
  • T: first helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_3
UID: 002137626
Type: Automatic domain
Parent: e1twfA6
Range: A:520-662
PDB: 5vvr
PDB Description: DNA-directed RNA polymerase II subunit RPB1
UniProt: P04050
Hsap BLAST neighbor: P24928
Species:

Structure of domain e5vvrA9

Domains in the same chain:

Download Pymol

e5vvrA6 A:8-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5vvrA4 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5vvrA1 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5vvrA9 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5vvrA5 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5vvrA2 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5vvrA7 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5vvrA8 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5vvrA3 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5vvrA6 A:8-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5vvrA4 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5vvrA1 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5vvrA9 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5vvrA5 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5vvrA2 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5vvrA7 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5vvrA8 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5vvrA3 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5vvrB7 B:18-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vvrB4 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5vvrB1 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5vvrB3 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5vvrB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5vvrB5 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5vvrB2 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vvrC1 C:1-41,C:173-270 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5vvrC2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5vvrD1 D:4-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5vvrE2 E:1-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5vvrE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5vvrF1 F:75-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5vvrG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5vvrG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5vvrH1 H:1-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5vvrI1 I:1-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5vvrI2 I:50-122 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5vvrJ1 J:1-70 HTH RPB10 RPB10
e5vvrK1 K:1-111 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5vvrL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5vvrM2 M:229-388,M:442-578 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5vvrM1 M:579-797 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases